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Common Analysis of Direct RNA SequencinG CUrrently Leads to Misidentification of 5-Methylcytosine Modifications at GCU Motifs.

Autor: Watson KJ; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA., Bromley RE; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA., Sparklin BC; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA., Gasser MT; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA., Bhattacharya T; Department of Biology, Indiana University, Bloomington, IN, USA., Lebov JF; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA., Tyson T; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA., Teigen LE; Department of Biology, University of Wisconsin Oshkosh, Oshkosh, WI, USA., Graf KT; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA., Michalski M; Department of Biology, University of Wisconsin Oshkosh, Oshkosh, WI, USA., Bruno VM; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA.; Department of Microbiology & Immunology, University of Maryland School of Medicine, Baltimore, MD 21201, USA., Lindsey ARI; Department of Biology, Indiana University, Bloomington, IN, USA., Hardy RW; Department of Biology, Indiana University, Bloomington, IN, USA., Newton ILG; Department of Biology, Indiana University, Bloomington, IN, USA., Hotopp JCD; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, USA.; Department of Microbiology & Immunology, University of Maryland School of Medicine, Baltimore, MD 21201, USA.; Greenebaum Cancer Center, University of Maryland School of Medicine, Baltimore, MD 21201, USA.

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2023 May 03. Date of Electronic Publication: 2023 May 03.

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Akademický článek

Pim kinase inhibitor co-treatment decreases alternative non-homologous end-joining DNA repair and genomic instability induced by topoisomerase 2 inhibitors in cells with FLT3 internal tandem duplication.

Autor: Scarpa M; University of Maryland Greenebaum Comprehensive Cancer Center, Baltimore, MD, USA.; Department of Medicine, University of Maryland School of Medicine, Baltimore, MD, USA., Kapoor S; University of Maryland Greenebaum Comprehensive Cancer Center, Baltimore, MD, USA., Tvedte ES; Institute for Genome Sciences, Baltimore, MD, USA., Doshi KA; University of Maryland Greenebaum Comprehensive Cancer Center, Baltimore, MD, USA., Zou YS; University of Maryland Greenebaum Comprehensive Cancer Center, Baltimore, MD, USA.; Department of Pathology, University of Maryland School of Medicine, Baltimore, MD, USA., Singh P; University of Maryland Greenebaum Comprehensive Cancer Center, Baltimore, MD, USA., Lee JK; University of Maryland Greenebaum Comprehensive Cancer Center, Baltimore, MD, USA., Chatterjee A; University of Maryland Greenebaum Comprehensive Cancer Center, Baltimore, MD, USA.; Department of Medicine, University of Maryland School of Medicine, Baltimore, MD, USA., Ali MKM; University of Maryland Greenebaum Comprehensive Cancer Center, Baltimore, MD, USA.; Department of Medicine, University of Maryland School of Medicine, Baltimore, MD, USA., Bromley RE; Institute for Genome Sciences, Baltimore, MD, USA., Hotopp JCD; University of Maryland Greenebaum Comprehensive Cancer Center, Baltimore, MD, USA.; Institute for Genome Sciences, Baltimore, MD, USA.; Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD, USA., Rassool FV; University of Maryland Greenebaum Comprehensive Cancer Center, Baltimore, MD, USA.; Department of Radiation Oncology, University of Maryland School of Medicine, Baltimore, MD, USA., Baer MR; University of Maryland Greenebaum Comprehensive Cancer Center, Baltimore, MD, USA.; Department of Medicine, University of Maryland School of Medicine, Baltimore, MD, USA.; Veterans Affairs Medical Center, Baltimore, MD, USA.

Publikováno v: Oncotarget [Oncotarget] 2021 Aug 31; Vol. 12 (18), pp. 1763-1779. Date of Electronic Publication: 2021 Aug 31 (Print Publication: 2021).

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Akademický článek

A Meta-Analysis of Wolbachia Transcriptomics Reveals a Stage-Specific Wolbachia Transcriptional Response Shared Across Different Hosts.

Autor: Chung M; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201.; Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD 21201., Basting PJ; Institute of Bioinformatics, University of Georgia, Athens, GA 30602., Patkus RS; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201., Grote A; Department of Biology, Center for Genomics and Systems Biology, New York University, NY 10003., Luck AN; New England Biolabs, Ipswich, MA 01938., Ghedin E; Department of Biology, Center for Genomics and Systems Biology, New York University, NY 10003., Slatko BE; New England Biolabs, Ipswich, MA 01938., Michalski M; Department of Biology, University of Wisconsin Oshkosh, WI 54901., Foster JM; New England Biolabs, Ipswich, MA 01938., Bergman CM; Institute of Bioinformatics, University of Georgia, Athens, GA 30602.; Department of Genetics, University of Georgia, Athens, GA 30602., Hotopp JCD; Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201 jdhotopp@som.umaryland.edu.; Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD 21201.; Greenebaum Cancer Center, University of Maryland, Baltimore, MD 21201.

Publikováno v: G3 (Bethesda, Md.) [G3 (Bethesda)] 2020 Sep 02; Vol. 10 (9), pp. 3243-3260. Date of Electronic Publication: 2020 Sep 02.

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Akademický článek

The two-component response regulator LiaR regulates cell wall stress responses, pili expression and virulence in group B Streptococcus.

Autor: Klinzing DC; Harvard Medical School, 25 Shattuck Street, Boston, MA 02115, USA.; Channing Laboratory, Brigham and Women's Hospital, 181 Longwood Avenue, Boston, MA 02115, USA., Ishmael N; Institute for Genome Sciences, University of Maryland Baltimore, 801 West Baltimore Street, Baltimore, MD 21201, USA.; The J. Craig Venter Institute, 9712 Medical Center Drive, Rockville, MD 20850, USA., Hotopp JCD; Institute for Genome Sciences, University of Maryland Baltimore, 801 West Baltimore Street, Baltimore, MD 21201, USA.; The J. Craig Venter Institute, 9712 Medical Center Drive, Rockville, MD 20850, USA., Tettelin H; Institute for Genome Sciences, University of Maryland Baltimore, 801 West Baltimore Street, Baltimore, MD 21201, USA.; The J. Craig Venter Institute, 9712 Medical Center Drive, Rockville, MD 20850, USA., Shields KR; Channing Laboratory, Brigham and Women's Hospital, 181 Longwood Avenue, Boston, MA 02115, USA., Madoff LC; Massachusetts Department of Public Health, Jamaica Plain, MA 02130, USA.; Division of Infectious Diseases and Immunology, University of Massachusetts Medical School, 55 Lake Avenue, North Worcester, MA 01655, USA., Puopolo KM; Harvard Medical School, 25 Shattuck Street, Boston, MA 02115, USA.; Department of Newborn Medicine, Brigham and Women's Hospital, 75 Francis Street, Boston, MA 02115, USA.; Channing Laboratory, Brigham and Women's Hospital, 181 Longwood Avenue, Boston, MA 02115, USA.

Publikováno v: Microbiology (Reading, England) [Microbiology (Reading)] 2013 Jul; Vol. 159 (Pt 7), pp. 1521-1534. Date of Electronic Publication: 2013 May 23.

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