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Akademický článek

Deciphering transcript architectural complexity in bacteria and archaea

Autor: John S. A. Mattick, Robin E. Bromley, Kaylee J. Watson, Ricky S. Adkins, Christopher I. Holt, Jarrett F. Lebov, Benjamin C. Sparklin, Tyonna S. Tyson, David A. Rasko, Julie C. Dunning Hotopp

Publikováno v: mBio, Vol 15, Iss 10 (2024)

ABSTRACT RNA transcripts are potential therapeutic targets, yet bacterial transcripts have uncharacterized biodiversity. We developed an algorithm for transcript prediction called tp.py using it to predict transcripts (mRNA and other RNAs) in Escheri

Externí odkaz: https://doaj.org/article/d0edc818c52849dfb46e0614f9812657

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Akademický článek

Updated annotation and meta-analysis of Brugia malayi transcriptomics data reveals consistent transcriptional profiles across time and space with some study-specific differences in adult female worm transcriptional profiles.

Autor: Christopher I Holt, Julie C Dunning Hotopp

Publikováno v: PLoS Neglected Tropical Diseases, Vol 18, Iss 9, p e0012511 (2024)

Genomics, transcriptomics, and proteomics have significantly advanced our understanding of obligately host-associated microbes, where interrogation of the biology is often limited by the complexity of the biological system and limited tools. This inc

Externí odkaz: https://doaj.org/article/b6ebecc6acad4bbe9f326fdd24e3a04f

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Triodopsis juxtidens subsp. robinae Hotopp, 2015, subsp. nov

Autor: Hotopp, Kenneth P.

Triodopsis juxtidens robinae subsp. nov. Type locality. Brush Creek Preserve, The Nature Conservancy, Mercer County, West Virginia, U.S.A.; on and in leaf litter on steep forested slopes of Brush Creek above its confluence with the Bluestone River. H

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0d75d6992ad5405172ed4b5a820a3471

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Reference

Hotopp

Autor: Hanks, Patrick

Publikováno v: Dictionary of American Family Names, 1 ed., 2006.

Externí odkaz: http://www.oxfordreference.com/view/10.1093/acref/9780195081374.001.0001/acref-9780195081374-e-28862

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Akademický článek

Improved metagenome assemblies through selective enrichment of bacterial genomic DNA from eukaryotic host genomic DNA using ATAC-seq

Autor: Lindsey J. Cantin, Julie C. Dunning Hotopp, Jeremy M. Foster

Publikováno v: Frontiers in Microbiology, Vol 15 (2024)

Genomics can be used to study the complex relationships between hosts and their microbiota. Many bacteria cannot be cultured in the laboratory, making it difficult to obtain adequate amounts of bacterial DNA and to limit host DNA contamination for th

Externí odkaz: https://doaj.org/article/9bf4225934884900b84600bee911ebe9

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Akademický článek

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