Zobrazeno 1 - 10
of 30
pro vyhledávání: '"Honorato RV"'
Autor:
Honorato RV; Computational Structural Biology Group, Bijvoet Centre for Biomolecular Research, Department of Chemistry, Faculty of Science, Utrecht University, Utrecht, The Netherlands., Trellet ME; Computational Structural Biology Group, Bijvoet Centre for Biomolecular Research, Department of Chemistry, Faculty of Science, Utrecht University, Utrecht, The Netherlands.; Fluigent, Le Kremlin-Bicêtre, France., Jiménez-García B; Computational Structural Biology Group, Bijvoet Centre for Biomolecular Research, Department of Chemistry, Faculty of Science, Utrecht University, Utrecht, The Netherlands.; Zymvol Biomodeling SL, Barcelona, Spain., Schaarschmidt JJ; Computational Structural Biology Group, Bijvoet Centre for Biomolecular Research, Department of Chemistry, Faculty of Science, Utrecht University, Utrecht, The Netherlands.; Karlsruhe Institute of Technology (KIT), Institute of Nanotechnology, Eggenstein-Leopoldshafen, Germany., Giulini M; Computational Structural Biology Group, Bijvoet Centre for Biomolecular Research, Department of Chemistry, Faculty of Science, Utrecht University, Utrecht, The Netherlands., Reys V; Computational Structural Biology Group, Bijvoet Centre for Biomolecular Research, Department of Chemistry, Faculty of Science, Utrecht University, Utrecht, The Netherlands., Koukos PI; Computational Structural Biology Group, Bijvoet Centre for Biomolecular Research, Department of Chemistry, Faculty of Science, Utrecht University, Utrecht, The Netherlands.; Biomedical Research Foundation, Academy of Athens, Athens, Greece., Rodrigues JPGLM; Computational Structural Biology Group, Bijvoet Centre for Biomolecular Research, Department of Chemistry, Faculty of Science, Utrecht University, Utrecht, The Netherlands.; Schrödinger Inc., New York, NY, USA., Karaca E; Computational Structural Biology Group, Bijvoet Centre for Biomolecular Research, Department of Chemistry, Faculty of Science, Utrecht University, Utrecht, The Netherlands.; Izmir Biomedicine and Genome Center, Izimir, Turkey., van Zundert GCP; Computational Structural Biology Group, Bijvoet Centre for Biomolecular Research, Department of Chemistry, Faculty of Science, Utrecht University, Utrecht, The Netherlands.; Schrödinger Inc., New York, NY, USA., Roel-Touris J; Computational Structural Biology Group, Bijvoet Centre for Biomolecular Research, Department of Chemistry, Faculty of Science, Utrecht University, Utrecht, The Netherlands.; Protein Design and Modeling Lab, Department of Structural Biology, Molecular Biology Institute of Barcelona (IBMB-CSIC), Barcelona, Spain., van Noort CW; Computational Structural Biology Group, Bijvoet Centre for Biomolecular Research, Department of Chemistry, Faculty of Science, Utrecht University, Utrecht, The Netherlands., Jandová Z; Computational Structural Biology Group, Bijvoet Centre for Biomolecular Research, Department of Chemistry, Faculty of Science, Utrecht University, Utrecht, The Netherlands.; Boehringer Ingelheim International GmbH, Vienna, Austria., Melquiond ASJ; Computational Structural Biology Group, Bijvoet Centre for Biomolecular Research, Department of Chemistry, Faculty of Science, Utrecht University, Utrecht, The Netherlands.; Utrecht Medical Center, Utrecht, the Netherlands., Bonvin AMJJ; Computational Structural Biology Group, Bijvoet Centre for Biomolecular Research, Department of Chemistry, Faculty of Science, Utrecht University, Utrecht, The Netherlands. a.m.j.j.bonvin@uu.nl.
Publikováno v:
Nature protocols [Nat Protoc] 2024 Jun 17. Date of Electronic Publication: 2024 Jun 17.
Autor:
Giulini M; Bijvoet Centre for Biomolecular Research, Faculty of Science - Chemistry, Utrecht University, Padualaan 8, 3584, Utrecht, CH, The Netherlands., Honorato RV; Bijvoet Centre for Biomolecular Research, Faculty of Science - Chemistry, Utrecht University, Padualaan 8, 3584, Utrecht, CH, The Netherlands., Rivera JL; Bijvoet Centre for Biomolecular Research, Faculty of Science - Chemistry, Utrecht University, Padualaan 8, 3584, Utrecht, CH, The Netherlands., Bonvin AMJJ; Bijvoet Centre for Biomolecular Research, Faculty of Science - Chemistry, Utrecht University, Padualaan 8, 3584, Utrecht, CH, The Netherlands. a.m.j.j.bonvin@uu.nl.
Publikováno v:
Communications biology [Commun Biol] 2024 Jan 06; Vol. 7 (1), pp. 49. Date of Electronic Publication: 2024 Jan 06.
Autor:
Lensink MF; Univ. Lille, CNRS, UMR8576 - UGSF - Unité de Glycobiologie Structurale et Fonctionnelle, Lille, France., Brysbaert G; Univ. Lille, CNRS, UMR8576 - UGSF - Unité de Glycobiologie Structurale et Fonctionnelle, Lille, France., Raouraoua N; Univ. Lille, CNRS, UMR8576 - UGSF - Unité de Glycobiologie Structurale et Fonctionnelle, Lille, France., Bates PA; Biomolecular Modeling Laboratory, The Francis Crick Institute, London, UK., Giulini M; Bijvoet Center for Biomolecular Research, Faculty of Science - Chemistry, Utrecht University, Utrecht, The Netherlands., Honorato RV; Bijvoet Center for Biomolecular Research, Faculty of Science - Chemistry, Utrecht University, Utrecht, The Netherlands., van Noort C; Bijvoet Center for Biomolecular Research, Faculty of Science - Chemistry, Utrecht University, Utrecht, The Netherlands., Teixeira JMC; Bijvoet Center for Biomolecular Research, Faculty of Science - Chemistry, Utrecht University, Utrecht, The Netherlands., Bonvin AMJJ; Bijvoet Center for Biomolecular Research, Faculty of Science - Chemistry, Utrecht University, Utrecht, The Netherlands., Kong R; Institute of Bioinformatics and Medical Engineering, School of Electrical and Information Engineering, Jiangsu University of Technology, Changzhou, China., Shi H; Institute of Bioinformatics and Medical Engineering, School of Electrical and Information Engineering, Jiangsu University of Technology, Changzhou, China., Lu X; Institute of Bioinformatics and Medical Engineering, School of Electrical and Information Engineering, Jiangsu University of Technology, Changzhou, China., Chang S; Institute of Bioinformatics and Medical Engineering, School of Electrical and Information Engineering, Jiangsu University of Technology, Changzhou, China., Liu J; Dept. of Electrical Engineering and Computer Science, University of Missouri, Columbia, Missouri, USA., Guo Z; Dept. of Electrical Engineering and Computer Science, University of Missouri, Columbia, Missouri, USA., Chen X; Dept. of Electrical Engineering and Computer Science, University of Missouri, Columbia, Missouri, USA., Morehead A; Dept. of Electrical Engineering and Computer Science, University of Missouri, Columbia, Missouri, USA., Roy RS; Dept. of Electrical Engineering and Computer Science, University of Missouri, Columbia, Missouri, USA., Wu T; Dept. of Electrical Engineering and Computer Science, University of Missouri, Columbia, Missouri, USA., Giri N; Dept. of Electrical Engineering and Computer Science, University of Missouri, Columbia, Missouri, USA., Quadir F; Dept. of Electrical Engineering and Computer Science, University of Missouri, Columbia, Missouri, USA., Chen C; Dept. of Electrical Engineering and Computer Science, University of Missouri, Columbia, Missouri, USA., Cheng J; Dept. of Electrical Engineering and Computer Science, University of Missouri, Columbia, Missouri, USA., Del Carpio CA; Choju-Medical Institute, Fukushimuta Hospital, Toyohashi-City, Aichi-ken, Japan., Ichiishi E; International University of Health and Welfare (IUHV Hospital), Nasushiobara-City, Japan., Rodriguez-Lumbreras LA; Instituto de Ciencias de la Vida y del Vino (ICVV), CSIC - Universidad de La Rioja - Gobierno de La Rioja, Logrono, Spain.; Barcelona Supercomputing Center (BSC), Barcelona, Spain., Fernandez-Recio J; Instituto de Ciencias de la Vida y del Vino (ICVV), CSIC - Universidad de La Rioja - Gobierno de La Rioja, Logrono, Spain.; Barcelona Supercomputing Center (BSC), Barcelona, Spain., Harmalkar A; Dept. of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland, USA., Chu LS; Dept. of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland, USA., Canner S; Dept. of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland, USA., Smanta R; Dept. of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland, USA., Gray JJ; Dept. of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland, USA.; Program in Molecular Biophysics, Johns Hopkins University, Baltimore, Maryland, USA., Li H; School of Physics, Huazhong University of Science and Technology, Wuhan, China., Lin P; School of Physics, Huazhong University of Science and Technology, Wuhan, China., He J; School of Physics, Huazhong University of Science and Technology, Wuhan, China., Tao H; School of Physics, Huazhong University of Science and Technology, Wuhan, China., Huang SY; School of Physics, Huazhong University of Science and Technology, Wuhan, China., Roel-Touris J; Protein Design and Modeling Lab, Dept. of Structural Biology, Molecular Biology Institute of Barcelona (IBMB-CSIC), Barcelona, Spain., Jimenez-Garcia B; Zymvol Biomodeling, Barcelona, Spain., Christoffer CW; Dept. of Computer Science, Purdue University, West Lafayette, Indiana, USA., Jain AJ; Dept. of Biological Sciences, Purdue University, West Lafayette, Indiana, USA., Kagaya Y; Dept. of Biological Sciences, Purdue University, West Lafayette, Indiana, USA., Kannan H; Dept. of Biological Sciences, Purdue University, West Lafayette, Indiana, USA.; Dept. of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai, India., Nakamura T; Dept. of Biological Sciences, Purdue University, West Lafayette, Indiana, USA., Terashi G; Dept. of Biological Sciences, Purdue University, West Lafayette, Indiana, USA., Verburgt JC; Dept. of Biological Sciences, Purdue University, West Lafayette, Indiana, USA., Zhang Y; Dept. of Computer Science, Purdue University, West Lafayette, Indiana, USA., Zhang Z; Dept. of Computer Science, Purdue University, West Lafayette, Indiana, USA., Fujuta H; Dept. of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras, Chennai, India., Sekijima M; Dept. of Computer Science, Tokyo Institute of Technology, Yokohama, Japan., Kihara D; Dept. of Computer Science, Purdue University, West Lafayette, Indiana, USA.; Dept. of Biological Sciences, Purdue University, West Lafayette, Indiana, USA., Khan O; Boston University, Boston, Massachusetts, USA., Kotelnikov S; Stony Brook University, New York City, New York, USA., Ghani U; Boston University, Boston, Massachusetts, USA., Padhorny D; Stony Brook University, New York City, New York, USA., Beglov D; Boston University, Boston, Massachusetts, USA., Vajda S; Boston University, Boston, Massachusetts, USA., Kozakov D; Stony Brook University, New York City, New York, USA., Negi SS; Sealy Center for Structural Biology and Molecular Biophysics, University of Texas Medical Branch, Galveston, Texas, USA., Ricciardelli T; King Abdullah University of Science and Technology (KAUST), Saudi Arabia., Barradas-Bautista D; King Abdullah University of Science and Technology (KAUST), Saudi Arabia., Cao Z; King Abdullah University of Science and Technology (KAUST), Saudi Arabia., Chawla M; King Abdullah University of Science and Technology (KAUST), Saudi Arabia., Cavallo L; King Abdullah University of Science and Technology (KAUST), Saudi Arabia.; Department of Chemistry and Biology, University of Salerno, Fisciano, Italy., Oliva R; University of Naples 'Parthenope', Naples, Italy., Yin R; University of Maryland Institute for Bioscience and Biotechnology Research, Rockville, Maryland, USA.; Dept. of Cell Biology and Molecular Genetics, University of Maryland, College Park, Maryland, USA., Cheung M; University of Maryland Institute for Bioscience and Biotechnology Research, Rockville, Maryland, USA.; Dept. of Chemistry and Biochemistry, University of Maryland, College Park, Maryland, USA., Guest JD; University of Maryland Institute for Bioscience and Biotechnology Research, Rockville, Maryland, USA.; Dept. of Cell Biology and Molecular Genetics, University of Maryland, College Park, Maryland, USA., Lee J; University of Maryland Institute for Bioscience and Biotechnology Research, Rockville, Maryland, USA.; Dept. of Cell Biology and Molecular Genetics, University of Maryland, College Park, Maryland, USA., Pierce BG; University of Maryland Institute for Bioscience and Biotechnology Research, Rockville, Maryland, USA.; Dept. of Cell Biology and Molecular Genetics, University of Maryland, College Park, Maryland, USA., Shor B; School of Computer Science and Engineering, The Hebrew University of Jerusalem, Jerusalem, Israel., Cohen T; School of Computer Science and Engineering, The Hebrew University of Jerusalem, Jerusalem, Israel., Halfon M; School of Computer Science and Engineering, The Hebrew University of Jerusalem, Jerusalem, Israel., Schneidman-Duhovny D; School of Computer Science and Engineering, The Hebrew University of Jerusalem, Jerusalem, Israel., Zhu S; Department of Electrical and Computer Engineering, Texas A&M University, College Station, Texas, USA., Yin R; Department of Electrical and Computer Engineering, Texas A&M University, College Station, Texas, USA., Sun Y; Department of Electrical and Computer Engineering, Texas A&M University, College Station, Texas, USA., Shen Y; Department of Electrical and Computer Engineering, Texas A&M University, College Station, Texas, USA.; Department of Computer Science and Engineering, Texas A&M University, College Station, Texas, USA.; Institute of Biosciences and Technology and Department of Translational Medical Sciences, Texas A&M University, Houston, Texas, USA., Maszota-Zieleniak M; University of Gdansk, Gdansk, Poland., Bojarski KK; Technical University of Gdansk, Gdansk, Poland., Lubecka EA; Technical University of Gdansk, Gdansk, Poland., Marcisz M; University of Gdansk, Gdansk, Poland., Danielsson A; University of Gdansk, Gdansk, Poland., Dziadek L; University of Gdansk, Gdansk, Poland., Gaardlos M; University of Gdansk, Gdansk, Poland., Gieldon A; University of Gdansk, Gdansk, Poland., Liwo A; University of Gdansk, Gdansk, Poland., Samsonov SA; University of Gdansk, Gdansk, Poland., Slusarz R; University of Gdansk, Gdansk, Poland., Zieba K; University of Gdansk, Gdansk, Poland., Sieradzan AK; University of Gdansk, Gdansk, Poland., Czaplewski C; University of Gdansk, Gdansk, Poland., Kobayashi S; School of Pharmacy, Kitasato University, Minato-ku, Tokyo, Japan., Miyakawa Y; School of Pharmacy, Kitasato University, Minato-ku, Tokyo, Japan., Kiyota Y; School of Pharmacy, Kitasato University, Minato-ku, Tokyo, Japan., Takeda-Shitaka M; School of Pharmacy, Kitasato University, Minato-ku, Tokyo, Japan., Olechnovic K; Institute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania., Valancauskas L; Institute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania., Dapkunas J; Institute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania., Venclovas C; Institute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania., Wallner B; Bioinformatics Division, Department of Physics, Chemistry, and Biology, Linkoping University, Linköping, Sweden., Yang L; National Key Laboratory of Science and Technology on Advanced Composites in Special Environments, Center for Composite Materials and Structures, Harbin Institute of Technology, Harbin, China.; School of Aerospace, Mechanical and Mechatronic Engineering, The University of Sydney, New South Wales, Australia., Hou C; School of Electronics and Information Engineering, Harbin Institute of Technology, Harbin, China., He X; National Key Laboratory of Science and Technology on Advanced Composites in Special Environments, Center for Composite Materials and Structures, Harbin Institute of Technology, Harbin, China.; Shenzhen STRONG Advanced Materials Research Institute Col, Ltd, Shenzhen, People's Republic of China., Guo S; National Key Laboratory of Science and Technology on Advanced Composites in Special Environments, Center for Composite Materials and Structures, Harbin Institute of Technology, Harbin, China., Jiang S; National Key Laboratory of Science and Technology on Advanced Composites in Special Environments, Center for Composite Materials and Structures, Harbin Institute of Technology, Harbin, China., Ma X; National Key Laboratory of Science and Technology on Advanced Composites in Special Environments, Center for Composite Materials and Structures, Harbin Institute of Technology, Harbin, China., Duan R; Dalton Cardiovascular Research Center, University of Missouri, Columbia, Missouri, USA., Qui L; Dalton Cardiovascular Research Center, University of Missouri, Columbia, Missouri, USA., Xu X; Dalton Cardiovascular Research Center, University of Missouri, Columbia, Missouri, USA., Zou X; Dalton Cardiovascular Research Center, University of Missouri, Columbia, Missouri, USA.; Dept. of Physics and Astronomy, University of Missouri, Columbia, Missouri, USA.; Dept. of Biochemistry, University of Missouri, Columbia, Missouri, USA.; Institute for Data Science and Informatics, University of Missouri, Columbia, Missouri, USA., Velankar S; Protein Data Bank in Europe, European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, Cambridge, UK., Wodak SJ; VIB-VUB Center for Structural Biology, Brussels, Belgium.
Publikováno v:
Proteins [Proteins] 2023 Dec; Vol. 91 (12), pp. 1658-1683. Date of Electronic Publication: 2023 Oct 31.
Autor:
Shukla R; NMR Spectroscopy, Department of Chemistry, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands; Membrane Biochemistry and Biophysics, Department of Chemistry, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands., Peoples AJ; NovoBiotic Pharmaceuticals, Cambridge, MA 02138, USA., Ludwig KC; Institute for Pharmaceutical Microbiology, University Hospital Bonn, University of Bonn, Bonn, Germany., Maity S; Moleculaire Biofysica, Zernike Instituut, Rijksuniversiteit Groningen, Nijenborgh 4, 9747 AG Groningen, the Netherlands., Derks MGN; NMR Spectroscopy, Department of Chemistry, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands; Membrane Biochemistry and Biophysics, Department of Chemistry, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands., De Benedetti S; Institute for Pharmaceutical Microbiology, University Hospital Bonn, University of Bonn, Bonn, Germany., Krueger AM; Moleculaire Biofysica, Zernike Instituut, Rijksuniversiteit Groningen, Nijenborgh 4, 9747 AG Groningen, the Netherlands., Vermeulen BJA; NMR Spectroscopy, Department of Chemistry, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands., Harbig T; Integrative Transcriptomics, Center for Bioinformatics, University of Tübingen, 72070 Tübingen, Germany., Lavore F; NMR Spectroscopy, Department of Chemistry, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands., Kumar R; NMR Spectroscopy, Department of Chemistry, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands., Honorato RV; NMR Spectroscopy, Department of Chemistry, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands., Grein F; Institute for Pharmaceutical Microbiology, University Hospital Bonn, University of Bonn, Bonn, Germany; German Center for Infection Research (DZIF), partner site Bonn-Cologne, Bonn, Germany., Nieselt K; Integrative Transcriptomics, Center for Bioinformatics, University of Tübingen, 72070 Tübingen, Germany., Liu Y; The Province and Ministry Co-sponsored Collaborative Innovation Center for Medical Epigenetics, Tianjin Key Laboratory on Technologies Enabling Development of Clinical Therapeutics and Diagnostics, School of Pharmacy, Tianjin Medical University, Tianjin 300070, China., Bonvin AMJJ; NMR Spectroscopy, Department of Chemistry, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands., Baldus M; NMR Spectroscopy, Department of Chemistry, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands., Kubitscheck U; Clausius-Institute for Physical and Theoretical Chemistry, University of Bonn, Bonn, Germany., Breukink E; Membrane Biochemistry and Biophysics, Department of Chemistry, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands., Achorn C; NovoBiotic Pharmaceuticals, Cambridge, MA 02138, USA., Nitti A; NovoBiotic Pharmaceuticals, Cambridge, MA 02138, USA., Schwalen CJ; Novartis Institutes for Biomedical Research, Cambridge, MA 02139, USA., Spoering AL; NovoBiotic Pharmaceuticals, Cambridge, MA 02138, USA., Ling LL; NovoBiotic Pharmaceuticals, Cambridge, MA 02138, USA., Hughes D; NovoBiotic Pharmaceuticals, Cambridge, MA 02138, USA., Lelli M; Magnetic Resonance Center (CERM) and Department of Chemistry 'Ugo Schiff', University of Florence, via della Lastruccia 3, Sesto Fiorentino 50019, Italy; Consorzio Interuniversitario Risonanze Magnetiche MetalloProteine (CIRMMP), via Sacconi 6, Sesto Fiorentino 50019, Italy., Roos WH; Moleculaire Biofysica, Zernike Instituut, Rijksuniversiteit Groningen, Nijenborgh 4, 9747 AG Groningen, the Netherlands., Lewis K; Antimicrobial Discovery Center, Northeastern University, Department of Biology, Boston, MA 02115, USA., Schneider T; Institute for Pharmaceutical Microbiology, University Hospital Bonn, University of Bonn, Bonn, Germany; German Center for Infection Research (DZIF), partner site Bonn-Cologne, Bonn, Germany. Electronic address: tschneider@uni-bonn.de., Weingarth M; NMR Spectroscopy, Department of Chemistry, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands. Electronic address: m.h.weingarth@uu.nl.
Publikováno v:
Cell [Cell] 2023 Sep 14; Vol. 186 (19), pp. 4059-4073.e27. Date of Electronic Publication: 2023 Aug 22.
Autor:
Shukla R; NMR Spectroscopy, Department of Chemistry, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands.; Membrane Biochemistry and Biophysics, Department of Chemistry, Utrecht University, Padualaan 8, 3584 CH, Utrecht, The Netherlands., Peoples AJ; NovoBiotic Pharmaceuticals, Cambridge, Massachusetts 02138, USA., Ludwig KC; Institute for Pharmaceutical Microbiology, University Hospital Bonn, University of Bonn, Bonn, Germany., Maity S; Moleculaire Biofysica, Zernike Instituut, Rijksuniversiteit Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands., Derks MGN; NMR Spectroscopy, Department of Chemistry, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands.; Membrane Biochemistry and Biophysics, Department of Chemistry, Utrecht University, Padualaan 8, 3584 CH, Utrecht, The Netherlands., de Benedetti S; Institute for Pharmaceutical Microbiology, University Hospital Bonn, University of Bonn, Bonn, Germany., Krueger AM; Institute for Physical and Theoretical Chemistry, University of Bonn, Bonn, Germany., Vermeulen BJA; NMR Spectroscopy, Department of Chemistry, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands., Lavore F; NMR Spectroscopy, Department of Chemistry, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands., Honorato RV; NMR Spectroscopy, Department of Chemistry, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands., Grein F; Institute for Pharmaceutical Microbiology, University Hospital Bonn, University of Bonn, Bonn, Germany.; German Center for Infection Research (DZIF), partner site Bonn-Cologne, Bonn, Germany., Bonvin A; NMR Spectroscopy, Department of Chemistry, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands., Kubitscheck U; Institute for Physical and Theoretical Chemistry, University of Bonn, Bonn, Germany., Breukink E; Membrane Biochemistry and Biophysics, Department of Chemistry, Utrecht University, Padualaan 8, 3584 CH, Utrecht, The Netherlands., Achorn C; NovoBiotic Pharmaceuticals, Cambridge, Massachusetts 02138, USA., Nitti A; NovoBiotic Pharmaceuticals, Cambridge, Massachusetts 02138, USA., Schwalen CJ; Novartis Institutes for Biomedical Research, Cambridge, MA 02139, USA., Spoering AL; NovoBiotic Pharmaceuticals, Cambridge, Massachusetts 02138, USA., Ling LL; NovoBiotic Pharmaceuticals, Cambridge, Massachusetts 02138, USA., Hughes D; NovoBiotic Pharmaceuticals, Cambridge, Massachusetts 02138, USA., Lelli M; Magnetic Resonance Center (CERM) and Department of Chemistry 'Ugo Schiff', University of Florence, via Sacconi 6, Sesto Fiorentino, 50019 Italy.; Consorzio Interuniversitario Risonanze Magnetiche MetalloProteine (CIRMMP), via Sacconi 6, Sesto Fiorentino, 50019 Italy., Roos WH; Moleculaire Biofysica, Zernike Instituut, Rijksuniversiteit Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands., Lewis K; Antimicrobial Discovery Center, Northeastern University, Department of Biology, Boston, Massachusetts 02115, USA., Schneider T; Institute for Pharmaceutical Microbiology, University Hospital Bonn, University of Bonn, Bonn, Germany., Weingarth M; NMR Spectroscopy, Department of Chemistry, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands.
Publikováno v:
BioRxiv : the preprint server for biology [bioRxiv] 2023 May 15. Date of Electronic Publication: 2023 May 15.
Autor:
van Noort CW; Bijvoet Centre for Biomolecular Research, Faculty of Science, Department of Chemistry, Utrecht University, Padualaan 8, Utrecht, 3584CH, Netherlands., Honorato RV; Bijvoet Centre for Biomolecular Research, Faculty of Science, Department of Chemistry, Utrecht University, Padualaan 8, Utrecht, 3584CH, Netherlands., Bonvin AMJJ; Bijvoet Centre for Biomolecular Research, Faculty of Science, Department of Chemistry, Utrecht University, Padualaan 8, Utrecht, 3584CH, Netherlands. Electronic address: a.m.j.j.bonvin@uu.nl.
Publikováno v:
Current opinion in structural biology [Curr Opin Struct Biol] 2021 Oct; Vol. 70, pp. 70-77. Date of Electronic Publication: 2021 Jun 14.
Autor:
Honorato RV; Bijvoet Centre for Biomolecular Research, Faculty of Science, Department of Chemistry, Utrecht University, Utrecht, Netherlands., Koukos PI; Bijvoet Centre for Biomolecular Research, Faculty of Science, Department of Chemistry, Utrecht University, Utrecht, Netherlands., Jiménez-García B; Bijvoet Centre for Biomolecular Research, Faculty of Science, Department of Chemistry, Utrecht University, Utrecht, Netherlands., Tsaregorodtsev A; Aix Marseille University, CNRS/IN2P3, CPPM, Marseille, France., Verlato M; INFN, Sezione di Padova, Padova, Italy., Giachetti A; Department of Chemistry and Magnetic Resonance Center, University of Florence, and C.I.R.M.M.P, Fiorentino, Italy., Rosato A; Department of Chemistry and Magnetic Resonance Center, University of Florence, and C.I.R.M.M.P, Fiorentino, Italy., Bonvin AMJJ; Bijvoet Centre for Biomolecular Research, Faculty of Science, Department of Chemistry, Utrecht University, Utrecht, Netherlands.
Publikováno v:
Frontiers in molecular biosciences [Front Mol Biosci] 2021 Jul 28; Vol. 8, pp. 729513. Date of Electronic Publication: 2021 Jul 28 (Print Publication: 2021).
Autor:
Koukos PI; Faculty of Science, Department of Chemistry, Bijvoet Center for Biomolecular Research, Computational Structural Biology Group, Utrecht University, Utrecht, The Netherlands., Roel-Touris J; Faculty of Science, Department of Chemistry, Bijvoet Center for Biomolecular Research, Computational Structural Biology Group, Utrecht University, Utrecht, The Netherlands., Ambrosetti F; Faculty of Science, Department of Chemistry, Bijvoet Center for Biomolecular Research, Computational Structural Biology Group, Utrecht University, Utrecht, The Netherlands.; Department of Physics, Sapienza University, Rome, Italy., Geng C; Faculty of Science, Department of Chemistry, Bijvoet Center for Biomolecular Research, Computational Structural Biology Group, Utrecht University, Utrecht, The Netherlands., Schaarschmidt J; Faculty of Science, Department of Chemistry, Bijvoet Center for Biomolecular Research, Computational Structural Biology Group, Utrecht University, Utrecht, The Netherlands.; Multiscale Materials Modelling and Virtual Design, Institute of Nanotechnology, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany., Trellet ME; Faculty of Science, Department of Chemistry, Bijvoet Center for Biomolecular Research, Computational Structural Biology Group, Utrecht University, Utrecht, The Netherlands., Melquiond ASJ; Faculty of Science, Department of Chemistry, Bijvoet Center for Biomolecular Research, Computational Structural Biology Group, Utrecht University, Utrecht, The Netherlands., Xue LC; Faculty of Science, Department of Chemistry, Bijvoet Center for Biomolecular Research, Computational Structural Biology Group, Utrecht University, Utrecht, The Netherlands., Honorato RV; Faculty of Science, Department of Chemistry, Bijvoet Center for Biomolecular Research, Computational Structural Biology Group, Utrecht University, Utrecht, The Netherlands., Moreira I; Faculty of Science, Department of Chemistry, Bijvoet Center for Biomolecular Research, Computational Structural Biology Group, Utrecht University, Utrecht, The Netherlands.; CNC-Center for Neuroscience and Cell Biology, Rua Larga, FMUC, Polo I, 1° andar, Universidade de Coimbra, Coimbra, Portugal., Kurkcuoglu Z; Faculty of Science, Department of Chemistry, Bijvoet Center for Biomolecular Research, Computational Structural Biology Group, Utrecht University, Utrecht, The Netherlands., Vangone A; Faculty of Science, Department of Chemistry, Bijvoet Center for Biomolecular Research, Computational Structural Biology Group, Utrecht University, Utrecht, The Netherlands., Bonvin AMJJ; Faculty of Science, Department of Chemistry, Bijvoet Center for Biomolecular Research, Computational Structural Biology Group, Utrecht University, Utrecht, The Netherlands.
Publikováno v:
Proteins [Proteins] 2020 Aug; Vol. 88 (8), pp. 1029-1036. Date of Electronic Publication: 2020 Jan 07.
Autor:
Lensink MF; University of Lille, CNRS UMR8576 UGSF, Unité de Glycobiologie Structurale et Fonctionnelle, Lille, France., Brysbaert G; University of Lille, CNRS UMR8576 UGSF, Unité de Glycobiologie Structurale et Fonctionnelle, Lille, France., Nadzirin N; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK., Velankar S; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK., Chaleil RAG; Biomolecular Modelling Laboratory, The Francis Crick Institute, London, UK., Gerguri T; Biomolecular Modelling Laboratory, The Francis Crick Institute, London, UK., Bates PA; Biomolecular Modelling Laboratory, The Francis Crick Institute, London, UK., Laine E; CNRS, IBPS, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), Sorbonne Université, Paris, France., Carbone A; CNRS, IBPS, Laboratoire de Biologie Computationnelle et Quantitative (LCQB), Sorbonne Université, Paris, France.; Institut Universitaire de France (IUF), Paris, France., Grudinin S; Université Grenoble Alpes, CNRS, Inria, Grenoble INP, LJK, Grenoble, France., Kong R; Institute of Bioinformatics and Medical Engineering, School of Electrical and Information Engineering, Jiangsu University of Technology, Changzhou, China., Liu RR; Institute of Bioinformatics and Medical Engineering, School of Electrical and Information Engineering, Jiangsu University of Technology, Changzhou, China., Xu XM; Institute of Bioinformatics and Medical Engineering, School of Electrical and Information Engineering, Jiangsu University of Technology, Changzhou, China., Shi H; Institute of Bioinformatics and Medical Engineering, School of Electrical and Information Engineering, Jiangsu University of Technology, Changzhou, China., Chang S; Institute of Bioinformatics and Medical Engineering, School of Electrical and Information Engineering, Jiangsu University of Technology, Changzhou, China., Eisenstein M; Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel., Karczynska A; Faculty of Chemistry, University of Gdańsk, Gdańsk, Poland., Czaplewski C; Faculty of Chemistry, University of Gdańsk, Gdańsk, Poland., Lubecka E; Institute of Informatics, Faculty of Mathematics, Physics, and Informatics, University of Gdańsk, Gdańsk, Poland., Lipska A; Faculty of Chemistry, University of Gdańsk, Gdańsk, Poland., Krupa P; Polish Academy of Sciences, Institute of Physics, Warsaw, Poland., Mozolewska M; Polish Academy of Sciences, Institute of Computer Science, Warsaw, Poland., Golon Ł; Faculty of Chemistry, University of Gdańsk, Gdańsk, Poland., Samsonov S; Faculty of Chemistry, University of Gdańsk, Gdańsk, Poland., Liwo A; Faculty of Chemistry, University of Gdańsk, Gdańsk, Poland.; School of Computational Sciences, Korea Institute for Advanced Study, Seoul, South Korea., Crivelli S; Department of Computer Science, UC Davis, Davis, California., Pagès G; Université Grenoble Alpes, CNRS, Inria, Grenoble INP, LJK, Grenoble, France., Karasikov M; Department of Computer Science, ETH, Zurich, Switzerland., Kadukova M; Université Grenoble Alpes, CNRS, Inria, Grenoble INP, LJK, Grenoble, France.; Moscow Institute of Physics and Technology, Dolgoprudniy, Russia., Yan Y; School of Physics, Huazhong University of Science and Technology, Wuhan, Hubei, China., Huang SY; School of Physics, Huazhong University of Science and Technology, Wuhan, Hubei, China., Rosell M; Barcelona Supercomputing Center (BSC), Barcelona, Spain.; Instituto de Ciencias de la Vid y del Vino (ICVV-CSIC), Logroño, Spain., Rodríguez-Lumbreras LA; Barcelona Supercomputing Center (BSC), Barcelona, Spain.; Instituto de Ciencias de la Vid y del Vino (ICVV-CSIC), Logroño, Spain., Romero-Durana M; Barcelona Supercomputing Center (BSC), Barcelona, Spain., Díaz-Bueno L; Barcelona Supercomputing Center (BSC), Barcelona, Spain., Fernandez-Recio J; Barcelona Supercomputing Center (BSC), Barcelona, Spain.; Instituto de Ciencias de la Vid y del Vino (ICVV-CSIC), Logroño, Spain.; Instituto de Biología Molecular de Barcelona (IBMB-CSIC), Barcelona, Spain., Christoffer C; Department of Computer Science, Purdue University, West Lafayette, Indiana., Terashi G; Department of Biological Sciences, Purdue University, West Lafayette, Indiana., Shin WH; Department of Biological Sciences, Purdue University, West Lafayette, Indiana., Aderinwale T; Department of Computer Science, Purdue University, West Lafayette, Indiana., Maddhuri Venkata Subraman SR; Department of Computer Science, Purdue University, West Lafayette, Indiana., Kihara D; Department of Computer Science, Purdue University, West Lafayette, Indiana., Kozakov D; Laufer Center for Physical and Quantitative Biology, Stony Brook University, Stony Brook, New York., Vajda S; Department of Biomedical Engineering, Boston University, Boston, Massachusetts.; Department of Chemistry, Boston University, Boston, Massachusetts., Porter K; Department of Biomedical Engineering, Boston University, Boston, Massachusetts., Padhorny D; Laufer Center for Physical and Quantitative Biology, Stony Brook University, Stony Brook, New York., Desta I; Department of Biomedical Engineering, Boston University, Boston, Massachusetts., Beglov D; Department of Biomedical Engineering, Boston University, Boston, Massachusetts., Ignatov M; Laufer Center for Physical and Quantitative Biology, Stony Brook University, Stony Brook, New York., Kotelnikov S; Moscow Institute of Physics and Technology, Dolgoprudniy, Russia.; Laufer Center for Physical and Quantitative Biology, Stony Brook University, Stony Brook, New York., Moal IH; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK., Ritchie DW; University of Lorraine, CNRS, Inria, LORIA, Nancy, France., Chauvot de Beauchêne I; University of Lorraine, CNRS, Inria, LORIA, Nancy, France., Maigret B; University of Lorraine, CNRS, Inria, LORIA, Nancy, France., Devignes MD; University of Lorraine, CNRS, Inria, LORIA, Nancy, France., Ruiz Echartea ME; University of Lorraine, CNRS, Inria, LORIA, Nancy, France., Barradas-Bautista D; Physical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia., Cao Z; Physical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia., Cavallo L; Physical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia., Oliva R; Department of Sciences and Technologies, University of Naples 'Parthenope', Napoli, Italy., Cao Y; Department of Electrical and Computer Engineering, Texas A&M University, College Station, Texas., Shen Y; Department of Electrical and Computer Engineering, Texas A&M University, College Station, Texas., Baek M; Department of Chemistry, Seoul National University, Seoul, Republic of Korea., Park T; Department of Chemistry, Seoul National University, Seoul, Republic of Korea., Woo H; Department of Chemistry, Seoul National University, Seoul, Republic of Korea., Seok C; Department of Chemistry, Seoul National University, Seoul, Republic of Korea., Braitbard M; Department of Biological Chemistry, Institute of Live Sciences, The Hebrew University of Jerusalem, Jerusalem, Israel., Bitton L; School of Computer Science and Engineering, The Hebrew University of Jerusalem, Jerusalem, Israel., Scheidman-Duhovny D; Department of Biological Chemistry, Institute of Live Sciences, The Hebrew University of Jerusalem, Jerusalem, Israel.; School of Computer Science and Engineering, The Hebrew University of Jerusalem, Jerusalem, Israel., Dapkūnas J; Institute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania., Olechnovič K; Institute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania., Venclovas Č; Institute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania., Kundrotas PJ; Computational Biology Program and Department of Molecular Biosciences, University of Kansas, Lawrence, Kansas., Belkin S; Computational Biology Program and Department of Molecular Biosciences, University of Kansas, Lawrence, Kansas., Chakravarty D; 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Publikováno v:
Proteins [Proteins] 2019 Dec; Vol. 87 (12), pp. 1200-1221. Date of Electronic Publication: 2019 Oct 25.
Autor:
Honorato RV; Faculty of Science-Chemistry, Bijvoet Center for Biomolecular Research, Utrecht University, Utrecht, Netherlands.; Brazilian Biosciences National Laboratory (LNBio), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, Brazil., Roel-Touris J; Faculty of Science-Chemistry, Bijvoet Center for Biomolecular Research, Utrecht University, Utrecht, Netherlands., Bonvin AMJJ; Faculty of Science-Chemistry, Bijvoet Center for Biomolecular Research, Utrecht University, Utrecht, Netherlands.
Publikováno v:
Frontiers in molecular biosciences [Front Mol Biosci] 2019 Oct 01; Vol. 6, pp. 102. Date of Electronic Publication: 2019 Oct 01 (Print Publication: 2019).