GWAS, MWAS and mGWAS provide insights into precision agriculture based on genotype-dependent microbial effects in foxtail millet

Autor: Yayu Wang, Xiaolin Wang, Shuai Sun, Canzhi Jin, Jianmu Su, Jinpu Wei, Xinyue Luo, Jiawen Wen, Tong Wei, Sunil Kumar Sahu, Hongfeng Zou, Hongyun Chen, Zhixin Mu, Gengyun Zhang, Xin Liu, Xun Xu, Lone Gram, Huanming Yang, Ertao Wang, Huan Liu

Publikováno v: Nature Communications, Vol 13, Iss 1, Pp 1-17 (2022)

Plant genotype alone appears to be insufficient to explain trait variations. This study integrates GWAS, MWAS and mGWAS in 827 foxtail millet cultivars, revealing that root-associated microbiota affect plant phenotypes in a host genotype-dependent ma

Externí odkaz: https://doaj.org/article/d797f01b6a814c21a5bd387ea41ae808

Taxonomic structure and functional association of foxtail millet root microbiome

Autor: Yuzhen Li, Yunzeng Zhang, Yayu Wang, Suisha Liang, Guohua Du, Yang Bai, Jian Wang, Zhang Haifeng, Jingwang Wan, Yueying Huang, Jin Xu, Guang Liu, Pengfan Zhang, Tao Jin, Xun Xu, Guangyi Fan, Huijue Jia, Xin Liu, Liang Xiao, Dechun Lin, Honggang Jiang, Karsten Kristiansen, Jing Xu, Houbao Zhang, Hongfeng Zou, Zhuye Jie, Jinying Li, Nian Wang, Huanming Yang, Haiyan Chu, Gengyun Zhang

Publikováno v: Jin, T, Wang, Y, Huang, Y, Xu, J, Zhang, P, Wang, N, Liu, X, Chu, H, Liu, G, Jiang, H, Li, Y, Xu, J, Kristiansen, K, Xiao, L, Zhang, Y, Zhang, G, Du, G, Zhang, H, Zou, H, Zhang, H, Jie, Z, Liang, S, Jia, H, Wan, J, Lin, D, Li, J, Fan, G, Yang, H, Wang, J, Bai, Y & Xu, X 2017, ' Taxonomic structure and functional association of foxtail millet root microbiome ', GigaScience, vol. 6, no. 10, pp. 1-12 . https://doi.org/10.1093/gigascience/gix089
GigaScience

The root microbes play pivotal roles in plant productivity, nutrient uptakes, and disease resistance. The root microbial community structure has been extensively investigated by 16S/18S/ITS amplicons and metagenomic sequencing in crops and model plan

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::189fd3c8103519c4a087963eac42ad28
https://doi.org/10.1093/gigascience/gix089

Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation

Autor: Jun Wang, Weiming He, Jun-Yang Xu, Huanming Yang, Guangming Liu, Yingrui Li, Jizeng Jia, Hongfeng Zou, Christopher P. Middleton, Genyun He, Xianchun Xia, Youzhi Ma, Fengya Zheng, Yadan Luo, Xueyong Zhang, Ruilian Jing, Manuel Spannagl, Shengkai Pan, Jianwen Li, Zhiwu Quan, Rongzhi Zhang, Long Mao, Hanhui Kuang, Klaus F. X. Mayer, Chi Zhang, Jian Wang, Dong Li, Peng Lu, Junyi Wang, Jinlong Gao, Rudi Appels, Thomas Wicker, Xiuying Kong, Guangyao Zhao, Qiuju Xia, Qinsi Liang, Xu Liu, Qun Hu, Jie Chen, Chuan Gao, Lifeng Gao, Zhonghu He, Matthias Pfeifer, Shancen Zhao, Caiyun Gou, Beat Keller, Yong Tao

Publikováno v: Nature 496, 91-95 (2013)
Jia, J, Zhao, S, Kong, X, Li, Y, Zhao, G, He, W, Appels, R, Pfeifer, M, Tao, Y, Zhang, X, Jing, R, Zhang, C, Ma, Y, Gao, L, Gao, C, Spannagl, M, Mayer, K F X, Li, D, Pan, S, Zheng, F, Hu, Q, Xia, X, Li, J, Liang, Q, Chen, J, Wicker, T, Gou, C, Kuang, H, He, G, Luo, Y, Keller, B, Xia, Q, Lu, P, Wang, J, Zou, H, Zhang, R, Xu, J, Gao, J, Middleton, C, Quan, Z, Liu, G, Wang, J, Yang, H, Liu, X, He, Z, Mao, L & Wang, J 2013, ' Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation ', Nature, vol. 496, no. 7443, pp. 91-95 . https://doi.org/10.1038/nature12028

About 8,000 years ago in the Fertile Crescent, a spontaneous hybridization of the wild diploid grass Aegilops tauschii (2n = 14; DD) with the cultivated tetraploid wheat Triticum turgidum (2n = 4x = 28; AABB) resulted in hexaploid wheat (T. aestivum;

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7cf01ab90b49029ca8b98e561e67672b
https://doi.org/10.1038/nature12028

The Tarenaya hassleriana Genome Provides Insight into Reproductive Trait and Genome Evolution of Crucifers

Autor: Xiao Zhong, Kerstin Kaufmann, Junyi Wang, Chao Bian, Andrea Bräutigam, Jocelyn C. Hall, M. Eric Schranz, Jing Chen, Erik van den Bergh, Xun Xu, Suzanne de Bruijn, Shifeng Cheng, Wujiao Li, Mingju Lv, Johannes A. Hofberger, Jiajia Xu, Xin-Guang Zhu, Andreas P.M. Weber, Julian M. Hibberd, Zhijun Zheng, Xin Liu, Hongfeng Zou, Gengyun Zhang, Annette Becker, Amey S. Bhide, Chengcheng Shi, Guangyi Fan, Yimin Tao, Peng Zeng, Zhiwu Quan, Canan Kuelahoglu

Publikováno v: The Plant Cell, 25(8), 2813-2830
The Plant Cell 25 (2013) 8

The Brassicaceae, including Arabidopsis thaliana and Brassica crops, is unmatched among plants in its wealth of genomic and functional molecular data and has long served as a model for understanding gene, genome, and trait evolution. However, genome

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::83f610b2b300452cd2b31fb3316ece81
https://research.wur.nl/en/publications/the-tarenaya-hassleriana-genome-provides-insight-into-reproductiv

Updated foxtail millet genome assembly and gene mapping of nine key agronomic traits by resequencing a RIL population.

Autor: Xuemei Ni, Qiuju Xia, Houbao Zhang, Shu Cheng, Hui Li, Guangyu Fan, Tao Guo, Ping Huang, Haitao Xiang, Qingchun Chen, Ning Li, Hongfeng Zou, Xuemei Cai, Xuejing Lei, Xiaoming Wang, Chengshu Zhou, Zhihai Zhao, Gengyun Zhang, Guohua Du, Wei Cai

Publikováno v: GigaScience; Feb2017, Vol. 6 Issue 2, p1-8, 8p