Effort required to finish shotgun-generated genome sequences differs significantly among vertebrates

Autor: Stantripop Sirintorn, Schandler Karen, Ho Shi-Ling, Haghighi Payam, Coleman Holly, Barnabas Beatrice B, Brooks Shelise Y, Maskeri Baishali, McDowell Jennifer C, Gupta Jyoti, Hansen Nancy F, Blakesley Robert W, Vogt Jennifer L, Thomas Pamela J, Bouffard Gerard G, Green Eric D

Publikováno v: BMC Genomics, Vol 11, Iss 1, p 21 (2010)

Abstract Background The approaches for shotgun-based sequencing of vertebrate genomes are now well-established, and have resulted in the generation of numerous draft whole-genome sequence assemblies. In contrast, the process of refining those assembl

Externí odkaz: https://doaj.org/article/dfba35b34658496ba11fc9cfdc94b691

Roving methyltransferases generate a mosaic epigenetic landscape and influence evolution in Bacteroides fragilis group.

Autor: Tisza, Michael J., Smith, Derek D. N., Clark, Andrew E., Youn, Jung-Ho, Barnabas, Beatrice B., Black, Sean, Bouffard, Gerard G., Brooks, Shelise Y., Crawford, Juyun, Marfani, Holly, Dekhtyar, Lyudmila, Han, Joel, Ho, Shi-Ling, Legaspi, Richelle, Maduro, Quino L., Masiello, Catherine A., McDowell, Jennifer C., Montemayor, Casandra, Mullikin, James C., Park, Morgan

Publikováno v: Nature Communications; 7/10/2023, Vol. 14 Issue 1, p1-15, 15p

Developmental pathway for potent V1V2-directed HIV-neutralizing antibodies

Autor: Doria-Rose, Nicole A., Schramm, Chaim A., Gorman, Jason, Moore, Penny L., Bhiman, Jinal N., Dekosky, Brandon J., Ernandes, Michael J., Georgiev, Ivelin S., Kim, Helen J., Pancera, Marie, Staupe, Ryan P., Altae-Tran, Han R., Bailer, Robert T., Crooks, Ema T., Cupo, Albert, Druz, Aliaksandr, Garrett, Nigel J., Hoi, Kam H., Kong, Rui, Louder, Mark K., Longo, Nancy S., McKee, Krisha, Nonyane, Molati, O'Dell, Sijy, Roark, Ryan S., Rudicell, Rebecca S., Schmidt, Stephen D., Sheward, Daniel J., Soto, Cinque, Wibmer, Constantinos Kurt, Yang, Yongping, Zhang, Zhenhai, Mullikin, James C., Binley, James M., Sanders, Rogier W., Wilson, Ian A., Moore, John P., Ward, Andrew B., Georgiou, George, Williamson, Carolyn, Abdool Karim, Salim S., Morris, Lynn, Kwong, Peter D., Shapiro, Lawrence, Mascola, John R., Becker, Jesse, Benjamin, Betty, Blakesley, Robert, Bouffard, Gerry, Brooks, Shelise, Coleman, Holly, Dekhtyar, Mila, Gregory, Michael, Guan, Xiaobin, Gupta, Jyoti, Han, Joel, Hargrove, April, Ho, Shi-ling, Johnson, Taccara, Legaspi, Richelle, Lovett, Sean, Maduro, Quino, Masiello, Cathy, Maskeri, Baishali, McDowell, Jenny, Montemayor, Casandra, Mullikin, James, Park, Morgan, Riebow, Nancy, Schandler, Karen, Schmidt, Brian, Sison, Christina, Stantripop, Mal, Thomas, James, Thomas, Pam, Vemulapalli, Meg, Young, Alice

Publikováno v: Nature, 509(7498), 55-62. Nature Publishing Group

Antibodies capable of neutralizing HIV-1 often target variable regions 1 and 2 (V1V2) of the HIV-1 envelope, but the mechanism of their elicitation has been unclear. Here we define the developmental pathway by which such antibodies are generated and

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::008282f22e95234be542d331b581a457
https://doi.org/10.1038/nature13036

Expanded microbiome niches of RAG-deficient patients

Autor: Blaustein, Ryan A., Shen, Zeyang, Kashaf, Sara Saheb, Lee-Lin, ShihQueen, Conlan, Sean, Thomas, Jim, Mullikin, James, Young, Alice, Bouffard, Gerry, Barnabas, Betty, Brooks, Shelise, Buchter, Chloe, Crawford, Juyun, Han, Joel, Ho, Shi-ling, Legaspi, Richelle, Maduro, Quino, Marfani, Holly, Montemayor, Casandra, Schandler, Karen, Schmidt, Brian, Sison, Christina, Stantripop, Mal, Black, Sean, Dekhtyar, Mila, Masiello, Cathy, McDowell, Jenny, Park, Morgan, Thomas, Pam, Vemulapalli, Meg, Bosticardo, Marita, Delmonte, Ottavia M., Holmes, Cassandra J., Taylor, Monica E., Banania, Glenna, Nagao, Keisuke, Dimitrova, Dimana, Kanakry, Jennifer A., Su, Helen, Holland, Steven M., Bergerson, Jenna R.E., Freeman, Alexandra F., Notarangelo, Luigi D., Kong, Heidi H., Segre, Julia A.

Publikováno v: Cell Reports Medicine; October 2023, Vol. 4 Issue: 10

Effort required to finish shotgun-generated genome sequences differs significantly among vertebrates

Autor: Blakesley, Robert W, Hansen, Nancy F, Gupta, Jyoti, McDowell, Jennifer C, Maskeri, Baishali, Barnabas, Beatrice B, Brooks, Shelise Y, Coleman, Holly, Haghighi, Payam, Ho, Shi-Ling, Schandler, Karen, Stantripop, Sirintorn, Vogt, Jennifer L, Thomas, Pamela J, Comparative Sequencing Program, NISC, Bouffard, Gerard G, Green, Eric D

Publikováno v: BMC Genomics, Vol 11, Iss 1, p 21 (2010)
BMC Genomics

Background The approaches for shotgun-based sequencing of vertebrate genomes are now well-established, and have resulted in the generation of numerous draft whole-genome sequence assemblies. In contrast, the process of refining those assemblies to im

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c2f8404355df77a535fa2d8e9cc92d5f
http://www.biomedcentral.com/1471-2164/11/21