New hypotheses of cell type diversity and novelty from orthology-driven comparative single cell and nuclei transcriptomics in echinoderms.

Autor: Meyer A; Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, United States., Ku C; Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, United States., Hatleberg WL; Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, United States., Telmer CA; Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, United States., Hinman V; Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, United States.

Publikováno v: ELife [Elife] 2023 Jul 20; Vol. 12. Date of Electronic Publication: 2023 Jul 20.

The arm of the starfish: The far-reaching applications of Patiria miniata as a model system in evolutionary, developmental, and regenerative biology.

Autor: Meyer A; Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA, United States., Hinman V; Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA, United States. Electronic address: veronica@cmu.edu.

Publikováno v: Current topics in developmental biology [Curr Top Dev Biol] 2022; Vol. 147, pp. 523-543. Date of Electronic Publication: 2022 Feb 21.

3D genomics across the tree of life reveals condensin II as a determinant of architecture type.

Autor: Hoencamp C; Division of Gene Regulation, Netherlands Cancer Institute, 1066 CX Amsterdam, Netherlands., Dudchenko O; The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA.; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA., Elbatsh AMO; Division of Gene Regulation, Netherlands Cancer Institute, 1066 CX Amsterdam, Netherlands., Brahmachari S; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA., Raaijmakers JA; Division of Cell Biology, Oncode Institute, Netherlands Cancer Institute, 1066 CX Amsterdam, Netherlands., van Schaik T; Division of Gene Regulation, Oncode Institute, Netherlands Cancer Institute, 1066 CX Amsterdam, Netherlands., Sedeño Cacciatore Á; Division of Gene Regulation, Netherlands Cancer Institute, 1066 CX Amsterdam, Netherlands., Contessoto VG; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA.; Department of Physics, Institute of Biosciences, Letters and Exact Sciences, São Paulo State University (UNESP), São José do Rio Preto - SP, 15054-000, Brazil., van Heesbeen RGHP; Division of Cell Biology, Oncode Institute, Netherlands Cancer Institute, 1066 CX Amsterdam, Netherlands., van den Broek B; BioImaging Facility, Netherlands Cancer Institute, 1066 CX Amsterdam, Netherlands., Mhaskar AN; Division of Gene Regulation, Netherlands Cancer Institute, 1066 CX Amsterdam, Netherlands., Teunissen H; Division of Gene Regulation, Oncode Institute, Netherlands Cancer Institute, 1066 CX Amsterdam, Netherlands., St Hilaire BG; The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA.; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Weisz D; The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA.; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Omer AD; The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA., Pham M; The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA., Colaric Z; The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA., Yang Z; Shanghai Institute for Advanced Immunochemical Studies, ShanghaiTech, Pudong 201210, China., Rao SSP; The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA.; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.; Department of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305, USA., Mitra N; The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA.; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Lui C; The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA., Yao W; The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA., Khan R; The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA.; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Moroz LL; Whitney Laboratory and Department of Neuroscience, University of Florida, Gainesville, FL 32611, USA., Kohn A; Whitney Laboratory and Department of Neuroscience, University of Florida, Gainesville, FL 32611, USA., St Leger J; Department of Biosciences, Cornell University College of Veterinary Medicine, Ithaca, NY 14853, USA., Mena A; SeaWorld San Diego, San Diego, CA 92109, USA., Holcroft K; Moody Gardens, Galveston, TX 77554, USA., Gambetta MC; Center for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland., Lim F; Department of Medicine and Molecular Biology, University of California, San Diego, La Jolla, CA 92093, USA., Farley E; Department of Medicine and Molecular Biology, University of California, San Diego, La Jolla, CA 92093, USA., Stein N; Leibniz Institute of Plant Genetics and Crop Plant Research (IPK Gatersleben), 06466 Seeland, Germany.; Center of Integrated Breeding Research (CiBreed), Department of Crop Sciences, Georg-August-University Göttingen, 37075 Göttingen, Germany.; UWA School of Agriculture and Environment, The University of Western Australia, Perth, WA 6009, Australia., Haddad A; The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA., Chauss D; National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892, USA., Mutlu AS; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Wang MC; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.; Huffington Center on Aging, Baylor College of Medicine, Houston, TX 77030, USA.; Howard Hughes Medical Institute, Baylor College of Medicine, Houston, TX 77030, USA., Young ND; Faculty of Veterinary and Agricultural Sciences, University of Melbourne, Parkville, VIC 3010, Australia., Hildebrandt E; Avian Diseases and Oncology Laboratory, US Department of Agriculture, Agricultural Research Service, East Lansing, MI 48823, USA., Cheng HH; Avian Diseases and Oncology Laboratory, US Department of Agriculture, Agricultural Research Service, East Lansing, MI 48823, USA., Knight CJ; Hopkins Marine Station, Stanford University, Pacific Grove, CA 93950, USA., Burnham TLU; Department of Wildlife, Fish, and Conservation Biology, University of California, Davis, Davis, CA 95616, USA.; Coastal and Marine Institute and Department of Biology, San Diego State University, San Diego, CA 92106, USA., Hovel KA; Coastal and Marine Institute and Department of Biology, San Diego State University, San Diego, CA 92106, USA., Beel AJ; Department of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305, USA., Mattei PJ; Department of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305, USA., Kornberg RD; Department of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305, USA., Warren WC; Department of Animal Sciences, University of Missouri, Columbia, MO 65211, USA., Cary G; The Jackson Laboratory, Bar Harbor, ME 04609, USA., Gómez-Skarmeta JL; Centro Andaluz de Biología del Desarrollo CSIC, Universidad Pablo de Olavide, 41013 Sevilla, Spain., Hinman V; Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA 15213, USA., Lindblad-Toh K; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.; Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University, 751 23 Uppsala, Sweden., Di Palma F; Department of Biological Sciences, University of East Anglia, Norwich NR4 7TJ, UK., Maeshima K; Genome Dynamics Laboratory, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.; Department of Genetics, Sokendai (Graduate University for Advanced Studies), Mishima, Shizuoka 411-8540, Japan., Multani AS; Department of Genetics, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA., Pathak S; Department of Genetics, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA., Nel-Themaat L; Department of Genetics, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA., Behringer RR; Department of Genetics, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA., Kaur P; UWA School of Agriculture and Environment, The University of Western Australia, Perth, WA 6009, Australia., Medema RH; Division of Cell Biology, Oncode Institute, Netherlands Cancer Institute, 1066 CX Amsterdam, Netherlands., van Steensel B; Division of Gene Regulation, Oncode Institute, Netherlands Cancer Institute, 1066 CX Amsterdam, Netherlands., de Wit E; Division of Gene Regulation, Oncode Institute, Netherlands Cancer Institute, 1066 CX Amsterdam, Netherlands., Onuchic JN; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA.; Departments of Physics and Astronomy, Chemistry, and Biosciences, Rice University, Houston, TX 77005, USA., Di Pierro M; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA.; Department of Physics, Northeastern University, Boston, MA 02115, USA., Lieberman Aiden E; The Center for Genome Architecture, Baylor College of Medicine, Houston, TX 77030, USA. b.rowland@nki.nl erez@erez.com.; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.; Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA.; Shanghai Institute for Advanced Immunochemical Studies, ShanghaiTech, Pudong 201210, China.; UWA School of Agriculture and Environment, The University of Western Australia, Perth, WA 6009, Australia.; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA., Rowland BD; Division of Gene Regulation, Netherlands Cancer Institute, 1066 CX Amsterdam, Netherlands. b.rowland@nki.nl erez@erez.com.

Publikováno v: Science (New York, N.Y.) [Science] 2021 May 28; Vol. 372 (6545), pp. 984-989.

Cross-species single-cell analysis reveals divergence and conservation of peripheral blood mononuclear cells.

Autor: Zhang, Siyu^1,2 (AUTHOR), Fang, Xiang³ (AUTHOR), Chang, Mengyang⁴ (AUTHOR), Zheng, Ming^1,2 (AUTHOR), Guo, Lijin^1,2 (AUTHOR), Xu, Yibin^1,2 (AUTHOR), Shu, Jingting⁵ (AUTHOR) shujingting@163.com, Nie, Qinghua^1,2 (AUTHOR) nqinghua@scau.edu.cn, Li, Zhenhui^1,2 (AUTHOR) lizhenhui@scau.edu.cn

Publikováno v: BMC Genomics. 12/2/2024, Vol. 25 Issue 1, p1-12. 12p.

Structure of Genes Encoding Oxidosqualene Cyclases—Key Enzymes of Triterpenoid Biosynthesis from Sea Cucumber Eupentacta fraudatrix.

Autor: Baldaev, Sergey N.¹ (AUTHOR) baldaevsergey@gmail.com, Chausova, Viktoria E.¹ (AUTHOR) v.chausova@gmail.com, Isaeva, Ksenia V.^1,2 (AUTHOR) issaevakssenia@gmail.com, Boyko, Alexey V.³ (AUTHOR) alteroldis@gmail.com, Stonik, Valentin A.¹ (AUTHOR) stonik@piboc.dvo.ru, Isaeva, Marina P.¹ (AUTHOR) issaeva@piboc.dvo.ru

Publikováno v: International Journal of Molecular Sciences. Dec2024, Vol. 25 Issue 23, p12881. 13p.