DNA microarray data and contextual analysis of correlation graphs

Autor: Hingamp Pascal, Rougemont Jacques

Publikováno v: BMC Bioinformatics, Vol 4, Iss 1, p 15 (2003)

Abstract Background DNA microarrays are used to produce large sets of expression measurements from which specific biological information is sought. Their analysis requires efficient and reliable algorithms for dimensional reduction, classification an

Externí odkaz: https://doaj.org/article/25a686e9aa564df7a6cac5857769c9c2

Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome

Autor: Acinas, Silvia G., Babin, Marcel, Bork, Peer, Boss, Emmanuel, Bowler, Chris, Cochrane, Guy, de Vargas, Colomban, Follows, Michael, Gorsky, Gabriel, Grimsley, Nigel, Guidi, Lionel, Hingamp, Pascal, Iudicone, Daniele, Jaillon, Olivier, Kandels-Lewis, Stefanie, Karp-Boss, Lee, Karsenti, Eric, Not, Fabrice, Ogata, Hiroyuki, Pesant, Stephane, Poulton, Nicole, Raes, Jeroen, Sardet, Christian, Speich, Sabrina, Stemmann, Lars, Sullivan, Matthew B., Sunagawa, Shinichi, Wincker, Patrick, Salazar, Guillem, Paoli, Lucas, Alberti, Adriana, Huerta-Cepas, Jaime, Ruscheweyh, Hans-Joachim, Cuenca, Miguelangel, Field, Christopher M., Coelho, Luis Pedro, Cruaud, Corinne, Engelen, Stefan, Gregory, Ann C., Labadie, Karine, Marec, Claudie, Pelletier, Eric, Royo-Llonch, Marta, Roux, Simon, Sánchez, Pablo, Uehara, Hideya, Zayed, Ahmed A., Zeller, Georg, Carmichael, Margaux, Dimier, Céline, Ferland, Joannie, Kandels, Stefanie, Picheral, Marc, Pisarev, Sergey, Poulain, Julie

Publikováno v: In Cell 14 November 2019 179(5):1068-1083

Marine DNA Viral Macro- and Microdiversity from Pole to Pole

Autor: Acinas, Silvia G., Babin, Marcel, Bork, Peer, Boss, Emmanuel, Bowler, Chris, Cochrane, Guy, de Vargas, Colomban, Follows, Michael, Gorsky, Gabriel, Grimsley, Nigel, Guidi, Lionel, Hingamp, Pascal, Iudicone, Daniele, Jaillon, Olivier, Kandels-Lewis, Stefanie, Karp-Boss, Lee, Karsenti, Eric, Not, Fabrice, Ogata, Hiroyuki, Pesant, Stéphane, Poulton, Nicole, Raes, Jeroen, Sardet, Christian, Speich, Sabrina, Stemmann, Lars, Sullivan, Matthew B., Sunagawa, Shinichi, Wincker, Patrick, Gregory, Ann C., Zayed, Ahmed A., Conceição-Neto, Nádia, Temperton, Ben, Bolduc, Ben, Alberti, Adriana, Ardyna, Mathieu, Arkhipova, Ksenia, Carmichael, Margaux, Cruaud, Corinne, Dimier, Céline, Domínguez-Huerta, Guillermo, Ferland, Joannie, Kandels, Stefanie, Liu, Yunxiao, Marec, Claudie, Picheral, Marc, Pisarev, Sergey, Poulain, Julie, Tremblay, Jean-Éric, Vik, Dean, Culley, Alexander I., Dutilh, Bas E., Roux, Simon

Publikováno v: In Cell 16 May 2019 177(5):1109-1123

The Ocean Gene Atlas v2.0: online exploration of the biogeography and phylogeny of plankton genes

Autor: Vernette, Caroline, Lecubin, Julien, Sánchez, Pablo, Tara Oceans Coordinators, Sunagawa, Shinichi, Delmont, Tom O., Acinas, Silvia G., Pelletier, Eric, Hingamp, Pascal, Lescot, Magali

Publikováno v: Nucleic Acids Research
Nucleic Acids Research, 2022, ⟨10.1093/nar/gkac420⟩
Nucleic Acids Research, 50 (W1)
Digital.CSIC. Repositorio Institucional del CSIC
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11 pages, 8 figures, 2 tables.-- Data availability: Ocean Gene Atlas 2.0 is freely available and can be accessed via the following link: https://tara-oceans.mio.osupytheas.fr/ocean-gene-atlas/. Source code is available at GitLab repository: https://g

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5cd0a9bc43ed93bdc7eb578fa280174c
http://hdl.handle.net/10261/278843

Macroscale patterns of oceanic zooplankton composition and size structure

Autor: Costa Brandao, Manoela, Benedetti, Fabio, Martini, Séverine, Dodji Soviadan, Yawouvi, Irisson, Jean-olivier, Romagnan, Jean-baptiste, Elineau, Amanda, Desnos, Corinne, Jalabert, Laetitia, Freire, Andrea S, Picheral, Marc, Guidi, Lionel, Gorsky, Gabriel, Bowler, Chris, Karp-boss, Lee, Henry, Nicolas, De Vargas, Colomban, Sullivan, Matthew B, Tara Oceans Consortium Coordinators, Stemmann, Lars, Lombard, Fabien, Acinas, Silvia G, Babin, Marcel, Bork, Peer, Boss, Emmanuel, Cochrane, Guy, Grimsley, Nigel, Hingamp, Pascal, Ludicone, Daniele, Jaillon, Olivier, Kandels, Stefanie, Karsenti, Eric, Not, Fabrice, Ogata, Hiroyuki, Poultron, Nicole, Pesant, Stephane, Raes, Jeroen, Sardet, Christian, Speich, Sabrina, Sunagawa, Shinichi, Winckler, Patrick

Publikováno v: Research Collection
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Scientific Reports, 11 (1)
Consejo Superior de Investigaciones Científicas (CSIC)
Scientific Reports (2045-2322) (Nature Research), 2021-08, Vol. 11, N. 1, P. 19p.
Scientific Reports, Vol 11, Iss 1, Pp 1-19 (2021)
Scientific Reports, Nature Publishing Group, 2021, 11 (1), ⟨10.1038/s41598-021-94615-5⟩

Ocean plankton comprise organisms from viruses to fish larvae that are fundamental to ecosystem functioning and the provision of marine services such as fisheries and CO2 sequestration. The latter services are partly governed by variations in plankto

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::10f95a2c3902d759ee274aca1b94fcba
https://doaj.org/article/b1e15d37490542f1987ff15153b8be78