The diagnostic value of nasal microbiota and clinical parameters in a multi-parametric prediction model to differentiate bacterial versus viral infections in lower respiratory tract infections.

Autor: Li Y; Department of Pathology & Clinical Bioinformatics, Erasmus MC Cancer Institute, University Medical Center Rotterdam, Rotterdam, The Netherlands., van Houten CB; Division of Paediatric Immunology and Infectious Diseases, University Medical Centre Utrecht, Utrecht University, Utrecht, The Netherlands., Boers SA; Department of Medical Microbiology and Infectious Diseases, Erasmus MC Cancer Institute, University Medical Center Rotterdam, Rotterdam, The Netherlands., Jansen R; Streeklab Haarlem, Haarlem, The Netherlands., Cohen A; MeMed, Tirat Carmel, Israel., Engelhard D; Division of Paediatric Infectious Disease Unit, Hadassah-Hebrew University Medical Centre, Jerusalem, Israel., Kraaij R; Department of Internal Medicine, Erasmus MC Cancer Institute, University Medical Center Rotterdam, Rotterdam, The Netherlands., Hiltemann SD; Department of Pathology & Clinical Bioinformatics, Erasmus MC Cancer Institute, University Medical Center Rotterdam, Rotterdam, The Netherlands., Ju J; Department of Pathology & Clinical Bioinformatics, Erasmus MC Cancer Institute, University Medical Center Rotterdam, Rotterdam, The Netherlands., Fernández D; Noray Bioinformatics, Derio, Spain., Mankoc C; Noray Bioinformatics, Derio, Spain., González E; Noray Bioinformatics, Derio, Spain., de Waal WJ; Department of Paediatrics, Diakonessenhuis, Utrecht, The Netherlands., de Winter-de Groot KM; Department of Paediatric Respiratory Medicine, University Medical Centre Utrecht, Utrecht University, Utrecht, The Netherlands., Wolfs TFW; Division of Paediatric Immunology and Infectious Diseases, University Medical Centre Utrecht, Utrecht University, Utrecht, The Netherlands., Meijers P; Department of Paediatrics, Gelderse Vallei Hospital, Ede, The Netherlands., Luijk B; Department of Respiratory Medicine, University Medical Centre Utrecht, Utrecht University, Utrecht, The Netherlands., Oosterheert JJ; Department of Internal Medicine and Infectious Diseases, University Medical Centre Utrecht, Utrecht University, Utrecht, The Netherlands., Sankatsing SUC; Department of Internal Medicine, Diakonessenhuis Utrecht, Utrecht, The Netherlands., Bossink AWJ; Department of Respiratory Medicine, Diakonessenhuis Utrecht, Utrecht, The Netherlands., Stein M; Department of Paediatrics, Hillel Yaffe Medical Centre, Hadera, Israel., Klein A; Department of Paediatrics, Hillel Yaffe Medical Centre, Hadera, Israel., Ashkar J; Department of Paediatrics, Hillel Yaffe Medical Centre, Hadera, Israel., Bamberger E; MeMed, Tirat Carmel, Israel.; Department of Paediatrics, Bnai Zion Medical Centre, Haifa, Israel., Srugo I; Department of Paediatrics, Bnai Zion Medical Centre, Haifa, Israel., Odeh M; Department of Internal Medicine A, Bnai Zion Medical Centre, Haifa, Israel., Dotan Y; Pulmonary Division, Rambam Health Care Campus, Haifa, Israel., Boico O; MeMed, Tirat Carmel, Israel., Etshtein L; MeMed, Tirat Carmel, Israel., Paz M; MeMed, Tirat Carmel, Israel., Navon R; MeMed, Tirat Carmel, Israel., Friedman T; MeMed, Tirat Carmel, Israel., Simon E; MeMed, Tirat Carmel, Israel., Gottlieb TM; MeMed, Tirat Carmel, Israel., Pri-Or E; MeMed, Tirat Carmel, Israel., Kronenfeld G; MeMed, Tirat Carmel, Israel., Oved K; MeMed, Tirat Carmel, Israel., Eden E; MeMed, Tirat Carmel, Israel., Stubbs AP; Department of Pathology & Clinical Bioinformatics, Erasmus MC Cancer Institute, University Medical Center Rotterdam, Rotterdam, The Netherlands., Bont LJ; Division of Paediatric Immunology and Infectious Diseases, University Medical Centre Utrecht, Utrecht University, Utrecht, The Netherlands., Hays JP; Department of Medical Microbiology and Infectious Diseases, Erasmus MC Cancer Institute, University Medical Center Rotterdam, Rotterdam, The Netherlands.

Publikováno v: PloS one [PLoS One] 2022 Apr 18; Vol. 17 (4), pp. e0267140. Date of Electronic Publication: 2022 Apr 18 (Print Publication: 2022).

Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota.

Autor: Heikema AP; Department of Medical Microbiology and Infectious Diseases, Erasmus University Medical Center (Erasmus MC), 3015 CN Rotterdam, The Netherlands., Horst-Kreft D; Department of Medical Microbiology and Infectious Diseases, Erasmus University Medical Center (Erasmus MC), 3015 CN Rotterdam, The Netherlands., Boers SA; Department of Microbiology, Leiden University Medical Center (LUMC), 2333 ZA Leiden, The Netherlands., Jansen R; Department of Pathology, Erasmus University Medical Center (Erasmus MC), 3015 CN Rotterdam, The Netherlands., Hiltemann SD; Department of Pathology, Erasmus University Medical Center (Erasmus MC), 3015 CN Rotterdam, The Netherlands., de Koning W; Department of Pathology, Erasmus University Medical Center (Erasmus MC), 3015 CN Rotterdam, The Netherlands., Kraaij R; Department of Internal Medicine, Erasmus University Medical Center (Erasmus MC), 3015 CN Rotterdam, The Netherlands., de Ridder MAJ; Department of Medical Informatics, Erasmus University Medical Center (Erasmus MC), 3015 CN Rotterdam, The Netherlands., van Houten CB; Division of Paediatric Immunology and Infectious Diseases, University Medical Center Utrecht, 3584 CX Utrecht, The Netherlands., Bont LJ; Division of Paediatric Immunology and Infectious Diseases, University Medical Center Utrecht, 3584 CX Utrecht, The Netherlands., Stubbs AP; Department of Pathology, Erasmus University Medical Center (Erasmus MC), 3015 CN Rotterdam, The Netherlands., Hays JP; Department of Medical Microbiology and Infectious Diseases, Erasmus University Medical Center (Erasmus MC), 3015 CN Rotterdam, The Netherlands.

Publikováno v: Genes [Genes (Basel)] 2020 Sep 21; Vol. 11 (9). Date of Electronic Publication: 2020 Sep 21.

Development and evaluation of a culture-free microbiota profiling platform (MYcrobiota) for clinical diagnostics.

Autor: Boers SA; Department of Medical Microbiology and Infectious Diseases, Erasmus University Medical Centre Rotterdam (Erasmus MC), Wytemaweg 80, 3015 CN, Rotterdam, the Netherlands., Hiltemann SD; Department of Bioinformatics, Erasmus University Medical Centre Rotterdam (Erasmus MC), Rotterdam, the Netherlands., Stubbs AP; Department of Bioinformatics, Erasmus University Medical Centre Rotterdam (Erasmus MC), Rotterdam, the Netherlands., Jansen R; Department of Molecular Biology, Regional Laboratory of Public Health Kennemerland, Haarlem, the Netherlands., Hays JP; Department of Medical Microbiology and Infectious Diseases, Erasmus University Medical Centre Rotterdam (Erasmus MC), Wytemaweg 80, 3015 CN, Rotterdam, the Netherlands. j.hays@erasmusmc.nl.

Publikováno v: European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology [Eur J Clin Microbiol Infect Dis] 2018 Jun; Vol. 37 (6), pp. 1081-1089. Date of Electronic Publication: 2018 Mar 16.