Zobrazeno 1 - 10
of 22
pro vyhledávání: '"Hildegard A, Wulf"'
Autor:
Theresa Guo, Kristina Diana A. Zambo, Fernando T. Zamuner, Tingting Ou, Christopher Hopkins, Dylan Z. Kelley, Hildegard A. Wulf, Eli Winkler, Rossin Erbe, Ludmila Danilova, Michael Considine, David Sidransky, Alexander Favorov, Liliana Florea, Elana J. Fertig, Daria A. Gaykalova
Publikováno v:
Epigenetics, Vol 15, Iss 9, Pp 959-971 (2020)
Human papillomavirus-related oropharyngeal squamous cell carcinoma (HPV+ OPSCC) represents a unique disease entity within head and neck cancer with rising incidence. Previous work has shown that alternative splicing events (ASEs) are prevalent in HPV
Externí odkaz:
https://doaj.org/article/79cc2062bbdf4787af9bc92b175c4901
Publikováno v:
Journal of Pharmacology and Experimental Therapeutics. 382:256-265
Autor:
Daria A. Gaykalova, Elana J. Fertig, Alexander V. Favorov, Joseph A. Califano, Sarah J. Wheelan, David Sidransky, Wayne M. Koch, Zubair Khan, William H. Westra, Justin A. Bishop, Elena Stavrovskaya, Jane A. Welch, Michael Considine, Alyza M. Skaist, Bahman Afsari, Dzov A. Singman, Theresa Guo, Hildegard A. Wulf, Ludmila V. Danilova, Evgeny Izumchenko, Emily L. Flam, Dylan Z. Kelley
The script for ChIP-Seq and RNA-Seq data integration
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8d00e9a4dde630dafb93b8bed73c0617
https://doi.org/10.1158/0008-5472.22416912.v1
https://doi.org/10.1158/0008-5472.22416912.v1
Autor:
Daria A. Gaykalova, Elana J. Fertig, Alexander V. Favorov, Joseph A. Califano, Sarah J. Wheelan, David Sidransky, Wayne M. Koch, Zubair Khan, William H. Westra, Justin A. Bishop, Elena Stavrovskaya, Jane A. Welch, Michael Considine, Alyza M. Skaist, Bahman Afsari, Dzov A. Singman, Theresa Guo, Hildegard A. Wulf, Ludmila V. Danilova, Evgeny Izumchenko, Emily L. Flam, Dylan Z. Kelley
Figure S1. Experimental Figure Scheme. Figure S2. ChIP-Seq quality assessment for different samples and histone marks. Figure S3. Comparable ChIP-Seq and ChIP-qRT-PCR detection of histone enrichment for different histone marks near three reference ge
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4c38fdecf77a506e13af767c48f3f27a
https://doi.org/10.1158/0008-5472.22416918.v1
https://doi.org/10.1158/0008-5472.22416918.v1
Autor:
Daria A. Gaykalova, Elana J. Fertig, Alexander V. Favorov, Joseph A. Califano, Sarah J. Wheelan, David Sidransky, Wayne M. Koch, Zubair Khan, William H. Westra, Justin A. Bishop, Elena Stavrovskaya, Jane A. Welch, Michael Considine, Alyza M. Skaist, Bahman Afsari, Dzov A. Singman, Theresa Guo, Hildegard A. Wulf, Ludmila V. Danilova, Evgeny Izumchenko, Emily L. Flam, Dylan Z. Kelley
Description of Supplemental Materials and Methods
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::53c7523dd995bda66306c3f0875e4a43
https://doi.org/10.1158/0008-5472.22416906.v1
https://doi.org/10.1158/0008-5472.22416906.v1
Autor:
Daria A. Gaykalova, Elana J. Fertig, Alexander V. Favorov, Joseph A. Califano, Sarah J. Wheelan, David Sidransky, Wayne M. Koch, Zubair Khan, William H. Westra, Justin A. Bishop, Elena Stavrovskaya, Jane A. Welch, Michael Considine, Alyza M. Skaist, Bahman Afsari, Dzov A. Singman, Theresa Guo, Hildegard A. Wulf, Ludmila V. Danilova, Evgeny Izumchenko, Emily L. Flam, Dylan Z. Kelley
Chromatin alterations mediate mutations and gene expression changes in cancer. Chromatin immunoprecipitation followed by sequencing (ChIP-Seq) has been utilized to study genome-wide chromatin structure in human cancer cell lines, yet numerous technic
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7ba42e5ea43c69b15d2d9e4020d3ddc3
https://doi.org/10.1158/0008-5472.c.6509685.v1
https://doi.org/10.1158/0008-5472.c.6509685.v1
Autor:
Daria A. Gaykalova, Elana J. Fertig, Alexander V. Favorov, Joseph A. Califano, Sarah J. Wheelan, David Sidransky, Wayne M. Koch, Zubair Khan, William H. Westra, Justin A. Bishop, Elena Stavrovskaya, Jane A. Welch, Michael Considine, Alyza M. Skaist, Bahman Afsari, Dzov A. Singman, Theresa Guo, Hildegard A. Wulf, Ludmila V. Danilova, Evgeny Izumchenko, Emily L. Flam, Dylan Z. Kelley
Legends for supplemental figures S1-S15 and tables S1-S11
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::349fea8370e79bc78f88b69b304fdecc
https://doi.org/10.1158/0008-5472.22416921.v1
https://doi.org/10.1158/0008-5472.22416921.v1
Autor:
Daria A. Gaykalova, Elana J. Fertig, Alexander V. Favorov, Joseph A. Califano, Sarah J. Wheelan, David Sidransky, Wayne M. Koch, Zubair Khan, William H. Westra, Justin A. Bishop, Elena Stavrovskaya, Jane A. Welch, Michael Considine, Alyza M. Skaist, Bahman Afsari, Dzov A. Singman, Theresa Guo, Hildegard A. Wulf, Ludmila V. Danilova, Evgeny Izumchenko, Emily L. Flam, Dylan Z. Kelley
Table S1. Clinical data for patient-derived PDX1, PDX2, UPPP1, and UPPP2 samples used for ChIP-based analysis. Table S2. ChIP-DNA qRT-PCR primers-probe sequence Table S3. Sample-specific enrichment of H3K4me3 histone mark at 5''UTR of individual gene
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::41b46eb0b45ccbada2a18df6ef81c2d4
https://doi.org/10.1158/0008-5472.22416909.v1
https://doi.org/10.1158/0008-5472.22416909.v1
Autor:
Daria A. Gaykalova, Elana J. Fertig, Alexander V. Favorov, Joseph A. Califano, Sarah J. Wheelan, David Sidransky, Wayne M. Koch, Zubair Khan, William H. Westra, Justin A. Bishop, Elena Stavrovskaya, Jane A. Welch, Michael Considine, Alyza M. Skaist, Bahman Afsari, Dzov A. Singman, Theresa Guo, Hildegard A. Wulf, Ludmila V. Danilova, Evgeny Izumchenko, Emily L. Flam, Dylan Z. Kelley
DiffBind script
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d21b46655b98f81d86bf320a8499ff25
https://doi.org/10.1158/0008-5472.22416915.v1
https://doi.org/10.1158/0008-5472.22416915.v1
Publikováno v:
Psychopharmacology. 239:2309-2316