Lisen&Curate: a platform to facilitate gathering textual evidence for curation of regulation of transcription initiation in bacteria

Autor: Heladia Salgado, Socorro Gama-Castro, Víctor H. Tierrafría, Julio Collado-Vides, Fabio Rinaldi, Carlos-Francisco Méndez-Cruz, Martín Díaz-Rodríguez, Oscar Lithgow-Serrano, Hilda Solano-Lira, Francisco Guadarrama-García

Publikováno v: Biochim Biophys Acta Gene Regul Mech

The number of published papers in biomedical research makes it rather impossible for a researcher to keep up to date. This is where manually curated databases contribute facilitating the access to knowledge. However, the structure required by databas

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e374c95c56a6bfe5456b1b8e49ace1d9
http://hdl.handle.net/10230/51907

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond

Autor: Heladia Salgado, Alejandra López-Fuentes, Alejandra Medina-Rivera, Kevin Alquicira-Hernández, Jair S. García-Sotelo, Liliana Porrón-Sotelo, Lucia Pannier, Julio Collado-Vides, Socorro Gama-Castro, Luis Muñiz-Rascado, Alberto Santos-Zavaleta, Irma Martínez-Flores, Ernesto Pérez-Rueda, Jaime A. Castro-Mondragon, Shirley Alquicira-Hernández, Daniela Ledezma-Tejeida, Fabio Rinaldi, César Bonavides-Martínez, Anastasia Hernández-Koutoucheva, Víctor Del Moral-Chávez, Hilda Solano-Lira

Publikováno v: Nucleic Acids Research
Nucleic Acids Research, Oxford University Press, 2016, 44 (D1), pp.D133-D143. ⟨10.1093/nar/gkv1156⟩
Nucleic Acids Research, 2016, 44 (D1), pp.D133-D143. ⟨10.1093/nar/gkv1156⟩

International audience; RegulonDB (http://regulondb.ccg.unam.mx) is one of the most useful and important resources on bacterial gene regulation, as it integrates the scattered scientific knowledge of the best-characterized organism, Escherichia coli

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::66532f66aa8e628dbb8419ab707e4984
https://doi.org/10.1093/nar/gkv1156

RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more

Autor: Alfredo José Hernández-Álvarez, Maricela Olvera, Gerardo Salgado-Osorio, Shirley Alquicira-Hernández, Kevin Alquicira-Hernández, Martín Peralta-Gil, Socorro Gama-Castro, Liliana Porrón-Sotelo, Verónica Jiménez-Jacinto, Jair S. García-Sotelo, Lucia Pannier, Verena Weiss, Julio Collado-Vides, Araceli M. Huerta, Alejandra Medina-Rivera, Heladia Salgado, Alejandra López-Fuentes, Leticia Vega-Alvarado, Alberto Santos-Zavaleta, Luis Muñiz-Rascado, César Bonavides-Martínez, Hilda Solano-Lira, Yalbi I. Balderas-Martínez, Aurora Labastida, Irma Martínez-Flores, Enrique Morett, Víctor Del Moral-Chávez

Publikováno v: Nucleic Acids Research

This article summarizes our progress with RegulonDB (http://regulondb.ccg.unam.mx/) during the past 2 years. We have kept up-to-date the knowledge from the published literature regarding transcriptional regulation in Escherichia coli K-12. We have ma

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8894714a8aa3b2aec2d1d4d02de2e849
https://doi.org/10.1093/nar/gks1201

An Approach towards Semi-automated Biomedical Literature Curation and Enrichment for a Major Biological Database

Autor: Fabio Rinaldi, Socorro Gama-Castro, Hilda Solano-Lira, Yalbi I. Balderas-Martínez, Oscar Lithgow-Serrano, Alejandra López-Fuentes, Julio Collado-Vides

Publikováno v: Redalyc
Universidad Nacional Autónoma de México
UNAM
Redalyc-UNAM
Polibits (México) Vol.52

"As part of a large-scale biocuration project, we are developing innovative techniques to process the biomedical literature and extract information relevant to specific biological investigations. Biological experts routinely extract core information

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6f1a022eeee0f19ad3bd3b79b9ef6bb8
http://www.redalyc.org/articulo.oa?id=402643625004