Zobrazeno 1 - 10
of 12
pro vyhledávání: '"Hideaki Furusawa"'
Publikováno v:
Particle & Particle Systems Characterization. 31:1122-1126
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::0928262c755f53cea924cfeddb6a7f32
https://doi.org/10.1002/ppsc.201400054
https://doi.org/10.1002/ppsc.201400054
Autor:
Hideaki Furusawa, T. Ebisuzaki, Bruce G. Elmegreen, Ryutaro Susukita, Kenji Yasuoka, T. Crawford, Roger H. Koch, M. E. Schabes, T. Narumi
Publikováno v:
IBM Journal of Research and Development. 48:199-207
The use of accelerator hardware for micromagnetics simulations is described, along with some initial results. The accelerator calculates the dipole interactions at 400 gigaflops, allowing large simulations to be performed with arbitrary geometries. T
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::234ce4af162f7940c24c29a45492888f
https://doi.org/10.1147/rd.482.0199
https://doi.org/10.1147/rd.482.0199
Autor:
Ryutaro Susukita, Hideaki Furusawa, Yoshinao Kobayashi, Kato Kenya, Kenji Yasuoka, Geoffrey D. McNiven, Bruce G. Elmegreen, Takahiro Koishi, Toshikazu Ebisuzaki, Tetsu Narumi, Atsushi Kawai
Publikováno v:
Computer Physics Communications. 155:115-131
We developed MDGRAPE-2, a hardware accelerator that calculates forces at high speed in molecular dynamics (MD) simulations. MDGRAPE-2 is connected to a PC or a workstation as an extension board. The sustained performance of one MDGRAPE-2 board is 15
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::cd54ef9e51ab21d2157592758d91fad1
https://doi.org/10.1016/s0010-4655(03)00349-7
https://doi.org/10.1016/s0010-4655(03)00349-7
Autor:
Hideaki Furusawa, Toshikazu Ebisuzaki, Ryutaro Susukita, Masayuki Hata, Kenji Yasuoka, Saburo Neya, Atsushi Kawai, Noriyuki Futatsugi, Takahiro Koishi, Tetsu Narumi, Noriaki Okimoto, Tyuji Hoshino, Atsushi Suenaga, Yasuyuki Fujii
Publikováno v:
The Journal of Physical Chemistry B. 107:10274-10283
Molecular dynamics simulation was performed on class A β-lactamase binding penicillin G (pen G). The structure of the acyl enzyme intermediate (AEI) was derived from the crystallographic data of the clavulanic acid bound enzyme. To execute the simul
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::d393af0a7e918054f7e71d47d4ccd52b
https://doi.org/10.1021/jp034536t
https://doi.org/10.1021/jp034536t
Autor:
Atsushi Kawai, Masayuki Hata, Kazunori Yamanaka, Hideaki Furusawa, Kenji Yasuoka, Noriaki Okimoto, Tyuji Hoshino, Atsushi Suenaga, Tetsu Narumi, Noriyuki Futatsugi, Yoshinori Hirano, Ryutaro Susukita, Takahiro Koishi, Toshikazu Ebisuzaki
Publikováno v:
Chem-Bio Informatics Journal. 3:1-11
We investigated the conformational change in the human prion protein owing to an Ala 117 →Val mutation by using molecular dynamics simulations. This mutation is related to Gerstmann-Straussler-Sheinker disease, one of the familial prion diseases. F
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::d3d0cb43db851b3c585f1cf9d32f71b5
https://doi.org/10.1273/cbij.3.1
https://doi.org/10.1273/cbij.3.1
Autor:
Ryutaro Susukita, Hideaki Furusawa, Tetsu Narumi, Toshikazu Ebisuzaki, Takahiro Koishi, Kenji Yasuoka
Publikováno v:
Journal of Non-Crystalline Solids. :332-336
Molecular dynamics (MD) simulations of the solidification process of an NaCl cluster are carried out. Voronoi analysis is employed to distinguish a crystal nucleus from molten NaCl. In the early stage of simulation, some small solid clusters of size
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::00d585a97257bf337e1f373f5f36ce1c
https://doi.org/10.1016/s0022-3093(02)01710-6
https://doi.org/10.1016/s0022-3093(02)01710-6
Autor:
Ryutaro Susukita, Roger H. Koch, Bruce G. Elmegreen, Hideaki Furusawa, Toshikazu Ebisuzaki, Kenji Yasuoka, Tetsu Narumi
Publikováno v:
Journal of Magnetism and Magnetic Materials. 250:39-48
The time development of an array of magnetic dipoles representing the internal magnetization of a thin film is calculated using a hardware accelerator, MD-GRAPE, for the determination of the magnetic vector potential. The results for single-layer arr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::301596a6ec83e73ff10c3e89b1d4f3e6
https://doi.org/10.1016/s0304-8853(02)00344-x
https://doi.org/10.1016/s0304-8853(02)00344-x
Autor:
Noriaki Okimoto, Atsushi Suenaga, Takahiro Koishi, Atsushi Kawai, Toshikazu Ebisuzaki, Kenji Yasuoka, Tetsu Narumi, Ryutaro Susukita, Noriyuki Futatsugi, Xiao Cheng Zeng, Hideaki Furusawa, Soohaeng Yoo
Publikováno v:
Physical Review Letters. 93
We report large-scale atomistic simulation of midrange nanoscale hydrophobic interaction, manifested by the nucleation of nanobubble between nanometer-sized hydrophobes at constrained equilibrium. When the length scale of the hydrophobes is greater t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7f59c2285ed97db691f52f11115c3d0f
https://doi.org/10.1103/physrevlett.93.185701
https://doi.org/10.1103/physrevlett.93.185701
Autor:
Ryutaro Susukita, Hideaki Furusawa, Atsushi Kawai, Yoshinori Hirano, Mariko Hatakeyama, Makoto Taiji, Toshikazu Ebisuzaki, Akihiko Konagaya, Tetsu Narumi, Anatoly Kiyatkin, Boris N. Kholodenko, Kenji Yasuoka, Atsushi Suenaga, Yousuke Ohno, Takahiro Koishi, Noriyuki Futatsugi, Noriaki Okimoto, Naoki Takada, Jan B. Hoek
Publikováno v:
The Journal of biological chemistry. 279(6)
Activated receptor tyrosine kinases bind the Shc adaptor protein through its N-terminal phosphotyrosine-binding (PTB) and C-terminal Src homology 2 (SH2) domains. After binding, Shc is phosphorylated within the central collagen-homology (CH) linker r
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6f43baaae47a6bd45de509c3b099d9b5
https://pubmed.ncbi.nlm.nih.gov/14613932
https://pubmed.ncbi.nlm.nih.gov/14613932
Publikováno v:
WCC 2000 - ICSP 2000. 2000 5th International Conference on Signal Processing Proceedings. 16th World Computer Congress 2000.
We developed WINE-2, a 46 TFLOPS computer, to accelerate molecular dynamics (MD) simulations. We need a huge computational power to understand the dynamics of large and complex molecules such as those of proteins and nucleic acids. WINE-2 is a specia
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::d8801f5930cbc52ccd532e77fe0663fa
https://doi.org/10.1109/icosp.2000.894557
https://doi.org/10.1109/icosp.2000.894557