Zobrazeno 1 - 10
of 10
pro vyhledávání: '"Herui Liao"'
Publikováno v:
Mobile DNA, Vol 15, Iss 1, Pp 1-7 (2024)
Abstract Genome annotation is an important but challenging task. Accurate identification of short interspersed nuclear elements (SINEs) is particularly difficult due to their lack of highly conserved sequences. AnnoSINE is state-of-the-art software f
Externí odkaz:
https://doaj.org/article/e0b6feb1253244359790b9848a42f59a
Publikováno v:
Microbiome, Vol 11, Iss 1, Pp 1-24 (2023)
Abstract Background Bacterial strains under the same species can exhibit different biological properties, making strain-level composition analysis an important step in understanding the dynamics of microbial communities. Metagenomic sequencing has be
Externí odkaz:
https://doaj.org/article/9d772688b8ea42abb94df2079a88304b
Publikováno v:
Genome Biology, Vol 23, Iss 1, Pp 1-28 (2022)
Abstract Viruses change constantly during replication, leading to high intra-species diversity. Although many changes are neutral or deleterious, some can confer on the virus different biological properties such as better adaptability. In addition, v
Externí odkaz:
https://doaj.org/article/80868df30d5d476e92a2686323d8379b
Autor:
Lu Zhang, Xiaodong Fang, Herui Liao, Zhenmiao Zhang, Xin Zhou, Lijuan Han, Yang Chen, Qinwei Qiu, Shuai Cheng Li
Publikováno v:
Microbiome, Vol 8, Iss 1, Pp 1-11 (2020)
Abstract Background The human microbiota are complex systems with important roles in our physiological activities and diseases. Sequencing the microbial genomes in the microbiota can help in our interpretation of their activities. The vast majority o
Externí odkaz:
https://doaj.org/article/38e9d369e6104b86a228bc8c954b5548
SummaryLinked-read sequencing technologies offering reads with both high base quality and long-range DNA connectedness have shown great success in genomic studies. The mainstream platforms include 10x Genomics linked-read (10x), Single Tube Long Frag
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::36c8e588826a14b6863702fcbda03b5e
https://doi.org/10.1101/2022.08.10.503458
https://doi.org/10.1101/2022.08.10.503458
Because bacterial strains can exhibit different biological properties, strain-level composition analysis plays a vital role in understanding the functions and dynamics of microbial communities. Metagenomic sequencing has become the major means for pr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::85f1397a907b7543e14f856779c4246c
https://doi.org/10.1101/2022.01.26.477962
https://doi.org/10.1101/2022.01.26.477962
Publikováno v:
Journal of proteome research. 20(3)
Stony corals form the foundation of coral reefs, which are of prominent ecological and economic significance. A robust workflow for investigating the coral proteome is essential in understanding coral biology. Here we investigated different preparati
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::eee3d02d65871a0fe66e52022deafadf
https://pubmed.ncbi.nlm.nih.gov/33630606
https://pubmed.ncbi.nlm.nih.gov/33630606
Autor:
Qinwei Qiu, Lu Zhang, Xiaodong Fang, Zhenmiao Zhang, Lijuan Han, Xin Zhou, Yang Chen, Herui Liao, Shuai Cheng Li
Publikováno v:
Microbiome
Microbiome, Vol 8, Iss 1, Pp 1-11 (2020)
Microbiome, Vol 8, Iss 1, Pp 1-11 (2020)
Background The human microbiota are complex systems with important roles in our physiological activities and diseases. Sequencing the microbial genomes in the microbiota can help in our interpretation of their activities. The vast majority of the mic
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1fc4e57382316929990b5e77e9565ce9
http://europepmc.org/articles/PMC7659138
http://europepmc.org/articles/PMC7659138
Autor:
Zhang, Lu, Xiaodong Fang, Herui Liao, Zhenmiao Zhang, Zhou, Xin, Lijuan Han, Chen, Yang, Qinwei Qiu, Shuai Cheng Li
Additional file 1: Table S1. Parameter configurations of the simulated data sets. Table S2. Summary of the microbes in MBARC-26. Microbes were classified as High- (Hsim, Molarity > 10−14), Medium- (Msim,10−15
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::637b57b70c484f1fee29c24a09b956d4
Autor:
Zhang, Lu, Xiaodong Fang, Herui Liao, Zhenmiao Zhang, Zhou, Xin, Lijuan Han, Chen, Yang, Qinwei Qiu, Shuai Cheng Li
Additional file 4: Figure S1. Distributions of bin completeness and contamination of SCF- and SCR- of human gut microbiome data. Figure S2. Upset plots for the shared genus (A: SCF-, C: SCR-) and species (B: SCF-, D: SCR-) of different subsampling da
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::47743f3909cd62724b3979f64a5370d1