Zobrazeno 1 - 8
of 8
pro vyhledávání: '"Hernando G. Suarez Duran"'
Autor:
Marnix H. Medema, David R. Nelson, Hernando G. Suarez Duran, Yosapol Harnvanichvech, Anne Osbourn, Michael J. Stephenson, M. Eric Schranz, Zhenhua Liu
Publikováno v:
New Phytol
New Phytologist, 227(4), 1109-1123
New Phytologist 227 (2020) 4
New Phytologist, 227(4), 1109-1123
New Phytologist 227 (2020) 4
Plants produce an array of specialized metabolites with important ecological functions. The mechanisms underpinning the evolution of new biosynthetic pathways are not well‐understood. Here, we exploit available genome sequence resources to investig
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5f337fcad317f859912563dd863d57b8
https://doi.org/10.1111/nph.16338
https://doi.org/10.1111/nph.16338
Autor:
Lemeng Dong, Jan C. van Haarst, Marnix H. Medema, Harro J. Bouwmeester, Hernando G. Suarez Duran, Yanting Wang, Elio Schijlen, Carolien Ruyter-Spira
Publikováno v:
BMC Plant Biology, 21(1)
BMC Plant Biology
BMC plant biology, 21:349. BioMed Central
BMC Plant Biology, Vol 21, Iss 1, Pp 1-21 (2021)
BMC Plant Biology 21 (2021) 1
BMC Plant Biology
BMC plant biology, 21:349. BioMed Central
BMC Plant Biology, Vol 21, Iss 1, Pp 1-21 (2021)
BMC Plant Biology 21 (2021) 1
Background Phosphorus (P) is an essential macronutrient for plant growth and development. Upon P shortage, plant responds with massive reprogramming of transcription, the Phosphate Starvation Response (PSR). In parallel, the production of strigolacto
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b4142914f2089085b872157d681a6f0f
https://doi.org/10.1186/s12870-021-03124-0
https://doi.org/10.1186/s12870-021-03124-0
Autor:
Samuel C. Epstein, Ashley C. Sisto, Tilmann Weber, Victòria Pascal Andreu, Jorge C. Navarro-Muñoz, George Lund, Justin J. J. van der Hooft, Louise K. Charkoudian, Kai Blin, Jérôme Collemare, Mohammad Alanjary, Nelly Selem-Mojica, Marnix H. Medema, Vittorio Tracanna, Barbara R. Terlouw, Satria A. Kautsar, Simon Shaw, Hernando G. Suarez Duran, Serina L. Robinson, Jeffrey A. van Santen, Roger G. Linington
Publikováno v:
Nucleic Acids Research. Oxford University Press
Kautsar, S A, Blin, K, Shaw, S, Navarro-Muñoz, J C, Terlouw, B R, van der Hooft, J J J, van Santen, J A, Tracanna, V, Suarez Duran, H G, Pascal Andreu, V, Selem-Mojica, N, Alanjary, M, Robinson, S L, Lund, G, Epstein, S C, Sisto, A C, Charkoudian, L K, Collemare, J, Linington, R G, Weber, T & Medema, M H 2020, ' MIBiG 2.0: a repository for biosynthetic gene clusters of known function ', Nucleic Acids Research, vol. 48, pp. D454–D458 . https://doi.org/10.1093/nar/gkz882
Nucleic acids research, 48(D1), D454-D458
Nucleic acids research 48 (2020) D1
Nucleic Acids Research
Kautsar, S A, Blin, K, Shaw, S, Navarro-Muñoz, J C, Terlouw, B R, van der Hooft, J J J, van Santen, J A, Tracanna, V, Suarez Duran, H G, Pascal Andreu, V, Selem-Mojica, N, Alanjary, M, Robinson, S L, Lund, G, Epstein, S C, Sisto, A C, Charkoudian, L K, Collemare, J, Linington, R G, Weber, T & Medema, M H 2020, ' MIBiG 2.0: a repository for biosynthetic gene clusters of known function ', Nucleic Acids Research, vol. 48, pp. D454–D458 . https://doi.org/10.1093/nar/gkz882
Nucleic acids research, 48(D1), D454-D458
Nucleic acids research 48 (2020) D1
Nucleic Acids Research
Fueled by the explosion of (meta)genomic data, genome mining of specialized metabolites has become a major technology for drug discovery and studying microbiome ecology. In these efforts, computational tools like antiSMASH have played a central role
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::093a1f279049461569ca81e68d9b9e6b
https://doi.org/10.1093/nar/gkz882
https://doi.org/10.1093/nar/gkz882
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 1795
Plants produce a vast diversity of specialized metabolites, which play important roles in the interactions with their microbiome, as well as with animals and other plants. Many such molecules have valuable biological activities that render them (pote
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::048ecb7bbbe30b4d6fb44b6e5e266ec0
https://pubmed.ncbi.nlm.nih.gov/29846928
https://pubmed.ncbi.nlm.nih.gov/29846928
Publikováno v:
Methods in Molecular Biology ISBN: 9781493978731
Plant Chemical Genomics. New York: Humana Press Inc.
Plant Chemical Genomics
Plant Chemical Genomics. New York: Humana Press Inc.
Plant Chemical Genomics
Plants produce a vast diversity of specialized metabolites, which play important roles in the interactions with their microbiome, as well as with animals and other plants. Many such molecules have valuable biological activities that render them (pote
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b0a19e7d48c392fba1a0c72f5b25495e
https://doi.org/10.1007/978-1-4939-7874-8_15
https://doi.org/10.1007/978-1-4939-7874-8_15
Autor:
Satria A. Kautsar, Rainer Breitling, Jeroen S. Dickschat, Emmanuel L. C. de los Santos, Mariana Nave, Tilmann Weber, Douglas A. Mitchell, Ekaterina Shelest, Sang Yup Lee, Christopher J. Schwalen, Marc G. Chevrette, Hyun Uk Kim, Eriko Takano, Thomas Wolf, Xiaowen Lu, Kai Blin, Marnix H. Medema, Hernando G. Suarez Duran
Publikováno v:
Nucleic acids research 45 (2017) W1
Blin, K, Wolf, T, Chevrette, M G, Lu, X, Schwalen, C J, Kautsar, S A, Suarez Duran, H G, de Los Santos, E L C, Kim, H U, Nave, M, Dickschat, J S, Mitchell, D A, Shelest, E, Breitling, R, Takano, E, Lee, S Y, Weber, T & Medema, M H 2017, ' antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification ', Nucleic Acids Research, vol. 45, pp. W36-W41 . https://doi.org/10.1093/nar/gkx319
Blin, K, Wolf, T, Chevrette, M G, Lu, X, Schwalen, C J, Kautsar, S A, Suarez Duran, H G, de los Santos, E C, Kim, H U, Nave, M, Dickschat, J S, Mitchell, D A, Shelest, E, Breitling, R, Takano, E, Lee, S Y, Weber, T & Medema, M H 2017, ' antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification ', Nucleic Acids Research, vol. 45, no. W1, pp. W36-W41 . https://doi.org/10.1093/nar/gkx319
Blin, K, Wolf, T, Chevrette, M G, Lu, X, Schwalen, C G, Kautsar, S A, Suarez Duran, H G, de los Santos, E L C, Uk Kim, H, Nave, M, Dickschat, J S, Mitchell, D A, Shelest, E, Breitling, R, Takano, E, Lee, S Y, Weber, T & Medema, M H 2017, ' antiSMASH 4.0––improvements in chemistry prediction and gene cluster boundary identification ', Nucleic acids research . https://doi.org/10.1093/nar/gkx319
Nucleic acids research, 45(W1), W36-W41
Nucleic Acids Research
Blin, K, Wolf, T, Chevrette, M G, Lu, X, Schwalen, C J, Kautsar, S A, Suarez Duran, H G, de Los Santos, E L C, Kim, H U, Nave, M, Dickschat, J S, Mitchell, D A, Shelest, E, Breitling, R, Takano, E, Lee, S Y, Weber, T & Medema, M H 2017, ' antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification ', Nucleic Acids Research, vol. 45, pp. W36-W41 . https://doi.org/10.1093/nar/gkx319
Blin, K, Wolf, T, Chevrette, M G, Lu, X, Schwalen, C J, Kautsar, S A, Suarez Duran, H G, de los Santos, E C, Kim, H U, Nave, M, Dickschat, J S, Mitchell, D A, Shelest, E, Breitling, R, Takano, E, Lee, S Y, Weber, T & Medema, M H 2017, ' antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification ', Nucleic Acids Research, vol. 45, no. W1, pp. W36-W41 . https://doi.org/10.1093/nar/gkx319
Blin, K, Wolf, T, Chevrette, M G, Lu, X, Schwalen, C G, Kautsar, S A, Suarez Duran, H G, de los Santos, E L C, Uk Kim, H, Nave, M, Dickschat, J S, Mitchell, D A, Shelest, E, Breitling, R, Takano, E, Lee, S Y, Weber, T & Medema, M H 2017, ' antiSMASH 4.0––improvements in chemistry prediction and gene cluster boundary identification ', Nucleic acids research . https://doi.org/10.1093/nar/gkx319
Nucleic acids research, 45(W1), W36-W41
Nucleic Acids Research
Many antibiotics, chemotherapeutics, crop protection agents and food preservatives originate from molecules produced by bacteria, fungi or plants. In recent years, genome mining methodologies have been widely adopted to identify and characterize the
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e31c9529aa092b714169ca3401641661
Publikováno v:
Nucleic acids research, 45(W1), W55-W63
Nucleic Acids Research
Nucleic acids research 45 (2017) W1
Kautsar, S A, Suarez Duran, H G, Blin, K, Osbourn, A & Medema, M H 2017, ' plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters ', Nucleic Acids Research, vol. 45, no. W1, pp. W55-W63 . https://doi.org/10.1093/nar/gkx305
Nucleic Acids Research
Nucleic acids research 45 (2017) W1
Kautsar, S A, Suarez Duran, H G, Blin, K, Osbourn, A & Medema, M H 2017, ' plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters ', Nucleic Acids Research, vol. 45, no. W1, pp. W55-W63 . https://doi.org/10.1093/nar/gkx305
Plants around the globe produce a wide variety of specialized metabolites that play key roles in communication and defense. Recently, evidence has been accumulating that (like in microbes) the genes encoding the biosynthetic pathways towards these me
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::97d425239b23d1070c872e3f301c69e3
https://research.wur.nl/en/publications/plantismash-automated-identification-annotation-and-expression-an
https://research.wur.nl/en/publications/plantismash-automated-identification-annotation-and-expression-an
Autor:
Yanting Wang, Hernando G. Suárez Duran, Jan C. van Haarst, Elio G.W.M Schijlen, Carolien Ruyter-Spira, Marnix H. Medema, Lemeng Dong, Harro J. Bouwmeester
Publikováno v:
BMC Plant Biology, Vol 21, Iss 1, Pp 1-21 (2021)
Abstract Background Phosphorus (P) is an essential macronutrient for plant growth and development. Upon P shortage, plant responds with massive reprogramming of transcription, the Phosphate Starvation Response (PSR). In parallel, the production of st
Externí odkaz:
https://doaj.org/article/b6d5ef2be9e9427f93b616ce4c9a39d8