Zobrazeno 1 - 10
of 17
pro vyhledávání: '"Henrik P. Nordberg"'
Publikováno v:
Bioinformatics. 29:3014-3019
Motivation: The recent revolution in sequencing technologies has led to an exponential growth of sequence data. As a result, most of the current bioinformatics tools become obsolete as they fail to scale with data. To tackle this ‘data deluge’, h
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ab4de4019623ee23ec81b1ab5555df7d
https://doi.org/10.1093/bioinformatics/btt528
https://doi.org/10.1093/bioinformatics/btt528
Autor:
Krishna Palaniappan, Susan X. Hua, Javier A. Izquierdo, Nicole Shapiro, Tanja Woyke, Henrik P. Nordberg, Konstantinos Liolios, Amrita Pati, Lee R. Lynd, Elise Rooney, Marcel Huntemann, Konstantinos Mavromatis, Nikos C. Kyrpides, Michael N. Cantor, Kenneth T. Rowe, Anna Guseva, Amy Chen, Victor Markowitz, James Han, Natalia Ivanova
Publikováno v:
Genome Announcements
Clostridium clariflavum strain 4-2a, a novel strain isolated from a thermophilic biocompost pile, has demonstrated an extensive capability to utilize both cellulose and hemicellulose under thermophilic anaerobic conditions. Here, we report the draft
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::78b729fc54052032820dfefc440b7211
https://pubmed.ncbi.nlm.nih.gov/26205857
https://pubmed.ncbi.nlm.nih.gov/26205857
Autor:
Evan Andersen, Susan X. Hua, T. B. K. Reddy, Robert M. Kelly, Dimitrios Stamatis, Alex Copeland, Laura L. Lee, Nicole Shapiro, Henrik P. Nordberg, Natalia Mikhailova, Marcel Huntemann, Amrita Pati, Galina Ovchinnikova, Michael N. Cantor, Robert W. Cottingham, Natalia Ivanova, Victor Markowitz, Jeffrey V. Zurawski, Tanja Woyke, Jonathan M. Conway, Javier A. Izquierdo, Nikos C. Kyrpides, Krishnaveni Palaniappan, Sara E. Blumer-Schuette, I-Min A. Chen
Publikováno v:
Genome Announcements
The genus Caldicellulosiruptor contains extremely thermophilic, cellulolytic bacteria capable of lignocellulose deconstruction. Currently, complete genome sequences for eleven Caldicellulosiruptor species are available. Here, we report genome sequenc
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6a4651d9159132c81049451b4fb62d6c
http://europepmc.org/articles/PMC4432334
http://europepmc.org/articles/PMC4432334
Autor:
Susan M. Pfiffner, Evan Andersen, Alex Copeland, Henrik P. Nordberg, Amrita Pati, X. Susan Hua, Marcel Huntemann, Nicole Shapiro, Krishna Palaniappan, Victor Markowitz, Michael N. Cantor, Dimitrios Stamatis, Amy Chen, T. B. K. Reddy, Natalia Mikhailova, Galina Ovchinnikova, Alice C. Layton, Natalia Ivanova, Tatiana A. Vishnivetskaya, Tanja Woyke, Archana Chauhan, Nikos C. Kyrpides
Publikováno v:
Genome Announcements
High-quality draft genome sequences were determined for 10 Exiguobacterium strains in order to provide insight into their evolutionary strategies for speciation and environmental adaptation. The selected genomes include psychrotrophic and thermophili
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1b6fecef93a162250cc06ea8ac8cbc79
https://doi.org/10.1128/genomea.01058-14
https://doi.org/10.1128/genomea.01058-14
Autor:
Marcel Huntemann, Natalia Mikhailova, Elizabeth A. Lobos, Henrik P. Nordberg, Dimitrios Stamatis, Jeffrey L. Blanchard, Amy Chen, Andrew J. Schaumberg, Susan B. Leschine, Amy S. Biddle, Galina Ovchinnikova, James Han, Nikos C. Kyrpides, Natalia Ivanova, Michael N. Cantor, Amrita Pati, Krishna Palaniappan, Victor Markowitz, Lynne Goodwin, T. B. K. Reddy, Tanja Woyke, Susan X. Hua
Publikováno v:
Standards in Genomic Sciences
Clostridium indolis DSM 755(T) is a bacterium commonly found in soils and the feces of birds and mammals. Despite its prevalence, little is known about the ecology or physiology of this species. However, close relatives, C. saccharolyticum and C. hat
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5a123dba4398e2c54316d9071be27e23
https://pubmed.ncbi.nlm.nih.gov/25197485
https://pubmed.ncbi.nlm.nih.gov/25197485
Autor:
Luis M. Bernardo, David Malon, B. Gibbard, Doug Olson, Arie Shoshani, R. Porter, A. Vaniachine, Henrik P. Nordberg, Torre Wenaus, Alex Sim, D. Zimmerman
Publikováno v:
Computer Physics Communications. 140:179-188
The High Energy and Nuclear Physics Data Access Grand Challenge project has developed an optimizing storage access software system that was prototyped at RHIC. It is currently undergoing integration with the STAR experiment in preparation for data ta
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::25d0c7140bd83d16bb4c7920a01c4e89
https://doi.org/10.1016/s0010-4655(01)00269-7
https://doi.org/10.1016/s0010-4655(01)00269-7
Publikováno v:
Concurrency and Computation: Practice and Experience. 13:605-619
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::79760b60a2cec1908fe1a018ae050ced
https://doi.org/10.1002/cpe.561
https://doi.org/10.1002/cpe.561
Autor:
Alexander Poliakov, Igor Shabalov, Serge Dusheyko, Tatyana Smirnova, Michael D Cantor, Susan Z Hua, Igor V. Grigoriev, Inna Dubchak, Henrik P. Nordberg
Publikováno v:
Nordberg, Henrik; Cantor, Michael; Dushekyo, Serge; Hua, Susan; Poliakov, Alexander; Shabalov, Igor; et al.(2013). The genome portal of the Department of Energy Joint Genome Institute: 2014 updates. Nucleic Acids Research. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. Retrieved from: http://www.escholarship.org/uc/item/8kv6x7p3
Nucleic Acids Research
Nucleic Acids Research
The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a national user facility, serves the diverse scientific community by providing integrated high-throughput sequencing and computational analysis to enable system-based scientific approa
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6535f1cdd21708398223441795b8a688
http://www.escholarship.org/uc/item/8kv6x7p3
http://www.escholarship.org/uc/item/8kv6x7p3
Autor:
Hans-Peter Klenk, Jorge Lalucat, Victor Markowitz, Nikos C. Kyrpides, Tanja Woyke, Joan Mayol, Krishnaveni Palaniappan, Magdalena Mulet, Henrik P. Nordberg, James Han, Amrita Pati, Margarita Gomila, T. B. K. Reddy, Elena García-Valdés, Antonio Busquets, Konstantinos Mavromatis, Arantxa Peña, Marcel Huntemann, I-Min Chen, Natalia Ivanova, Andrew J. Schaumberg, Antonio Bennasar
Publikováno v:
Genome Announcements
Pseudomonas azotifigens strain 6H33b T is a nitrogen fixer isolated from a hyperthermal compost pile in 2005 by Hatayama and collaborators. Here we report the draft genome, which has an estimated size of 5.0 Mb, exhibits an average G+C content of 66.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7a0ab458d075488dd20e2b40a6b79d7b
https://pubmed.ncbi.nlm.nih.gov/24179119
https://pubmed.ncbi.nlm.nih.gov/24179119
Autor:
Tanja Woyke, Victor Markowitz, Lynne Goodwin, Ioanna Pagani, Subarna Thakur, Amy Chen, Natalia Mikhailova, Maher Gtari, Imen Nouioui, J. Chris Detter, James Han, Faten Ghodhbane-Gtari, Nicholas Beauchemin, Louis S. Tisa, Henrik P. Nordberg, Nikos C. Kyrpides, Luis Gabriel Wall, Galina Ovchinnikova, Natalia Ivanova, Saubashya Sur, Michael N. Cantor, Chia-Lin Wei, Marcel Huntemann, Ernest Szeto, Susan Xinyu Hua, Teal Furnholm, Cliff Han, Arnab Sen, Amrita Pati, Kostas Mavrommatis
Publikováno v:
CONICET Digital (CONICET)
Consejo Nacional de Investigaciones Científicas y Técnicas
instacron:CONICET
Genome Announcements
Consejo Nacional de Investigaciones Científicas y Técnicas
instacron:CONICET
Genome Announcements
Members of the actinomycete genus Frankia form a nitrogen-fixing symbiosis with 8 different families of actinorhizal plants. We report a draft genome sequence for Frankia sp. strain BMG5.12, a nitrogen-fixing actinobacterium isolated from Tunisian so
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5e845fc4fac0f616ba55c1dca6abed3c
https://doi.org/10.1128/genomea.00468-13
https://doi.org/10.1128/genomea.00468-13