Chromosome evolution and the genetic basis of agronomically important traits in greater yam

Autor: Jessica B. Lyons, Joseph W. Carlson, Eva Hřibová, Ranjana Bhattacharjee, Nwadili Co, Van Deynze A, Okereke Nr, Alice Muchugi, Matthew T. Parker, Hendre Ps, Muthemba S, Jaroslav Doležel, Kariba R, Jonathan Featherston, Olufisayo Kolade, P.L. Kumar, Gordon G. Simpson, Ramni Jamnadass, Shengquiang Shu, Robert Asiedu, Chiedozie Egesi, Katarzyna Knop, Jude Obidiegwu, Oniyinde Io, Daniel S. Rokhsar, Geoffrey J. Barton, Nwogha J, David Goodstein, Sherwood Av, Antonio Lopez-Montes, Jessen V. Bredeson, Asrat Asfaw, Nnabue I

The nutrient-rich tubers of the greater yam Dioscorea alata L. provide food and income security for millions of people around the world. Despite its global importance, however, greater yam remains an “orphan crop.” Here we address this resource g

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::2cd1df117d41ac4d8ae9a0f17b1141f1
https://doi.org/10.1101/2021.04.14.439117

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The Gynandropsis gynandra genome provides insights into whole-genome duplications and the evolution of C4 photosynthesis in Cleomaceae.

Autor: Hoang NV; Biosystematics Group, Wageningen University, Droevendaalsesteeg 1, 6708PB Wageningen, The Netherlands., Sogbohossou EOD; Biosystematics Group, Wageningen University, Droevendaalsesteeg 1, 6708PB Wageningen, The Netherlands.; Laboratory of Genetics, Biotechnology and Seed Science (GbioS), Faculty of Agronomic Sciences, University of Abomey-Calavi, BP 2549 Abomey-Calavi, Republic of Benin., Xiong W; Biosystematics Group, Wageningen University, Droevendaalsesteeg 1, 6708PB Wageningen, The Netherlands., Simpson CJC; Department of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, UK., Singh P; Department of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, UK., Walden N; Biosystematics Group, Wageningen University, Droevendaalsesteeg 1, 6708PB Wageningen, The Netherlands.; Centre for Organismal Studies, Heidelberg University, 69120 Heidelberg, Germany., van den Bergh E; Biosystematics Group, Wageningen University, Droevendaalsesteeg 1, 6708PB Wageningen, The Netherlands., Becker FFM; Laboratory of Genetics, Wageningen University and Research, Droevendaalsesteeg 1, 6708PB Wageningen, The Netherlands., Li Z; Department of Integrative Biology, The University of Texas at Austin, Austin, TX 78712, USA., Zhu XG; State Key Laboratory for Plant Molecular Genetics, Center of Excellence for Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China., Brautigam A; Faculty of Biology, Bielefeld University, 33501 Bielefeld, Germany., Weber APM; Cluster of Excellence on Plant Science (CEPLAS), Institute of Plant Biochemistry, Heinrich Heine University Düsseldorf, 40225 Düsseldorf, Germany., van Haarst JC; Business Unit Bioscience, Wageningen University and Research, Droevendaalsesteeg 1, 6708PB Wageningen, The Netherlands., Schijlen EGWM; Business Unit Bioscience, Wageningen University and Research, Droevendaalsesteeg 1, 6708PB Wageningen, The Netherlands., Hendre PS; African Orphan Crops Consortium (AOCC), World Agroforestry (ICRAF), Nairobi 00100, Kenya., Van Deynze A; African Orphan Crops Consortium (AOCC), World Agroforestry (ICRAF), Nairobi 00100, Kenya.; Seed Biotechnology Center, University of California, Davis, California 95616, USA., Achigan-Dako EG; Laboratory of Genetics, Biotechnology and Seed Science (GbioS), Faculty of Agronomic Sciences, University of Abomey-Calavi, BP 2549 Abomey-Calavi, Republic of Benin., Hibberd JM; Department of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, UK., Schranz ME; Biosystematics Group, Wageningen University, Droevendaalsesteeg 1, 6708PB Wageningen, The Netherlands.

Publikováno v: The Plant cell [Plant Cell] 2023 Apr 20; Vol. 35 (5), pp. 1334-1359.

Genomic Resources to Guide Improvement of the Shea Tree.

Autor: Hale I; Department of Agriculture, Nutrition, and Food Systems, University of New Hampshire, Durham, NH, United States., Ma X; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.; Center for Plant Systems Biology, VIB, Ghent, Belgium., Melo ATO; Department of Agriculture, Nutrition, and Food Systems, University of New Hampshire, Durham, NH, United States., Padi FK; Plant Breeding Division, Cocoa Research Institute of Ghana, Ghana Cocoa Board, New Tafo, Ghana., Hendre PS; AOCC Genomics Laboratory and Tree Genebank Research Unit, World Agroforestry (CIFOR-ICRAF), Nairobi, Kenya., Kingan SB; Pacific Biosciences, Menlo Park, CA, United States., Sullivan ST; Phase Genomics, Seattle, WA, United States., Chen S; Seed Biotechnology Center, University of California, Davis, Davis, CA, United States., Boffa JM; AOCC Genomics Laboratory and Tree Genebank Research Unit, World Agroforestry (CIFOR-ICRAF), Nairobi, Kenya., Muchugi A; AOCC Genomics Laboratory and Tree Genebank Research Unit, World Agroforestry (CIFOR-ICRAF), Nairobi, Kenya.; The Forage Genebank, Feed and Forage Development Program, International Livestock Research Institute, Addis Ababa, Ethiopia., Danquah A; West Africa Centre for Crop Improvement, College of Basic and Applied Sciences, University of Ghana, Accra, Ghana., Barnor MT; Plant Breeding Division, Cocoa Research Institute of Ghana, Ghana Cocoa Board, New Tafo, Ghana., Jamnadass R; AOCC Genomics Laboratory and Tree Genebank Research Unit, World Agroforestry (CIFOR-ICRAF), Nairobi, Kenya., Van de Peer Y; Department of Plant Biotechnology and Bioinformatics, Ghent University, Ghent, Belgium.; Center for Plant Systems Biology, VIB, Ghent, Belgium.; College of Horticulture, Academy for Advanced Interdisciplinary Studies, Nanjing Agricultural University, Nanjing, China.; Centre for Microbial Ecology and Genomics, Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria, South Africa., Van Deynze A; AOCC Genomics Laboratory and Tree Genebank Research Unit, World Agroforestry (CIFOR-ICRAF), Nairobi, Kenya.; Seed Biotechnology Center, University of California, Davis, Davis, CA, United States.

Publikováno v: Frontiers in plant science [Front Plant Sci] 2021 Sep 09; Vol. 12, pp. 720670. Date of Electronic Publication: 2021 Sep 09 (Print Publication: 2021).

Draft genome sequence of Solanum aethiopicum provides insights into disease resistance, drought tolerance, and the evolution of the genome.

Autor: Song B; BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China.; China National GeneBank, BGI-Shenzhen, Jinsha Road, Shenzhen 518120, China.; State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen 518083, China., Song Y; BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China.; State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen 518083, China.; BGI-Qingdao, BGI-Shenzhen, Qingdao 266555, China., Fu Y; BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China.; China National GeneBank, BGI-Shenzhen, Jinsha Road, Shenzhen 518120, China., Kizito EB; Uganda Christian University, Bishop Tucker Road, Box 4, Mukono, Uganda., Kamenya SN; Uganda Christian University, Bishop Tucker Road, Box 4, Mukono, Uganda.; Biosciences Eastern and Central Africa (BecA) - International Livestock Research Institute (ILRI) Hub, P.O. Box 30709, Nairobi 00100, Kenya., Kabod PN; Uganda Christian University, Bishop Tucker Road, Box 4, Mukono, Uganda., Liu H; BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China.; China National GeneBank, BGI-Shenzhen, Jinsha Road, Shenzhen 518120, China.; State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen 518083, China., Muthemba S; African Orphan Crops Consortium, World Agroforestry Centre (ICRAF), United Nations Avenue, Nairobi 00100, Kenya., Kariba R; African Orphan Crops Consortium, World Agroforestry Centre (ICRAF), United Nations Avenue, Nairobi 00100, Kenya., Njuguna J; Biosciences Eastern and Central Africa (BecA) - International Livestock Research Institute (ILRI) Hub, P.O. Box 30709, Nairobi 00100, Kenya., Maina S; Biosciences Eastern and Central Africa (BecA) - International Livestock Research Institute (ILRI) Hub, P.O. Box 30709, Nairobi 00100, Kenya., Stomeo F; Biosciences Eastern and Central Africa (BecA) - International Livestock Research Institute (ILRI) Hub, P.O. Box 30709, Nairobi 00100, Kenya., Djikeng A; Biosciences Eastern and Central Africa (BecA) - International Livestock Research Institute (ILRI) Hub, P.O. Box 30709, Nairobi 00100, Kenya., Hendre PS; African Orphan Crops Consortium, World Agroforestry Centre (ICRAF), United Nations Avenue, Nairobi 00100, Kenya., Chen X; BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China.; China National GeneBank, BGI-Shenzhen, Jinsha Road, Shenzhen 518120, China., Chen W; BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China.; China National GeneBank, BGI-Shenzhen, Jinsha Road, Shenzhen 518120, China., Li X; BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China.; China National GeneBank, BGI-Shenzhen, Jinsha Road, Shenzhen 518120, China., Sun W; BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China.; China National GeneBank, BGI-Shenzhen, Jinsha Road, Shenzhen 518120, China., Wang S; BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China.; State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen 518083, China., Cheng S; BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China.; China National GeneBank, BGI-Shenzhen, Jinsha Road, Shenzhen 518120, China., Muchugi A; African Orphan Crops Consortium, World Agroforestry Centre (ICRAF), United Nations Avenue, Nairobi 00100, Kenya., Jamnadass R; African Orphan Crops Consortium, World Agroforestry Centre (ICRAF), United Nations Avenue, Nairobi 00100, Kenya., Shapiro HY; African Orphan Crops Consortium, World Agroforestry Centre (ICRAF), United Nations Avenue, Nairobi 00100, Kenya.; University of California, 1 Shields Ave, Davis, CA, USA.; Mars, Incorporated, 6885 Elm Street, McLean, VA 22101, USA., Van Deynze A; University of California, 1 Shields Ave, Davis, CA, USA., Yang H; BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China.; China National GeneBank, BGI-Shenzhen, Jinsha Road, Shenzhen 518120, China., Wang J; BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China.; China National GeneBank, BGI-Shenzhen, Jinsha Road, Shenzhen 518120, China., Xu X; BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China.; China National GeneBank, BGI-Shenzhen, Jinsha Road, Shenzhen 518120, China.; State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen 518083, China., Odeny DA; International Crops Research Institute for the Semi-Arid Tropics (ICRISAT) - Eastern and Southern Africa, P.O. Box 39063, Nairobi 00623, Kenya., Liu X; BGI-Shenzhen, Beishan Industrial Zone, Yantian District, Shenzhen 518083, China.; China National GeneBank, BGI-Shenzhen, Jinsha Road, Shenzhen 518120, China.; State Key Laboratory of Agricultural Genomics, BGI-Shenzhen, Shenzhen 518083, China.

Publikováno v: GigaScience [Gigascience] 2019 Oct 01; Vol. 8 (10).