Zobrazeno 1 - 10
of 60
pro vyhledávání: '"Helena Skutkova"'
Publikováno v:
BMC Genomics, Vol 23, Iss S3, Pp 1-12 (2022)
Abstract Background Bacterial genotyping is a crucial process in outbreak investigation and epidemiological studies. Several typing methods such as pulsed-field gel electrophoresis, multilocus sequence typing (MLST) and whole genome sequencing are cu
Externí odkaz:
https://doaj.org/article/1730819455ee4403b41293743281dad9
Autor:
Matej Bezdicek, Marketa Nykrynova, Karel Sedlar, Stanislava Kralova, Jana Hanslikova, Aja Komprdova, Helena Skutkova, Iva Kocmanova, Jiri Mayer, Martina Lengerova
Publikováno v:
Scientific Reports, Vol 11, Iss 1, Pp 1-11 (2021)
Abstract Routinely used typing methods including MLST, rep-PCR and whole genome sequencing (WGS) are time-consuming, costly, and often low throughput. Here, we describe a novel mini-MLST scheme for Eschericha coli as an alternative method for rapid g
Externí odkaz:
https://doaj.org/article/f40d483413004e129df96d4cdd5a08fe
Autor:
Marketa Nykrynova, Roman Jakubicek, Vojtech Barton, Matej Bezdicek, Martina Lengerova, Helena Skutkova
Publikováno v:
Frontiers in Microbiology, Vol 13 (2022)
Recently, nanopore sequencing has come to the fore as library preparation is rapid and simple, sequencing can be done almost anywhere, and longer reads are obtained than with next-generation sequencing. The main bottleneck still lies in data postproc
Externí odkaz:
https://doaj.org/article/2c3a117c42f04c7db99ad70abd3fae0d
Publikováno v:
Journal of Advanced Research, Vol 18, Iss , Pp 9-18 (2019)
Large-scale comparative studies of DNA fingerprints prefer automated chip capillary electrophoresis over conventional gel planar electrophoresis due to the higher precision of the digitalization process. However, the determination of band sizes is st
Externí odkaz:
https://doaj.org/article/860d40879e804f1a9350939971320cb5
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 17, Iss , Pp 118-126 (2019)
Species delineation based on bacterial genomes is an essential part of the research of prokaryotes. In silico genome-to-genome comparison methods are computationally demanding, but much less tedious and error prone than the wet-lab methods. In this p
Externí odkaz:
https://doaj.org/article/0276337377d940a29b49871a19a11237
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 17, Iss , Pp 406-414 (2019)
Bioinformatics may seem to be a scientific field processing primarily large string datasets, as nucleotides and amino acids are represented with dedicated characters. On the other hand, many computational tasks that bioinformatics challenges are math
Externí odkaz:
https://doaj.org/article/bc3bdeae49e9435083bf54efeb2fd278
Autor:
Marketa Nykrynova, Vojtech Barton, Karel Sedlar, Matej Bezdicek, Martina Lengerova, Helena Skutkova
Publikováno v:
Frontiers in Microbiology, Vol 12 (2021)
Genotyping methods are used to distinguish bacterial strains from one species. Thus, distinguishing bacterial strains on a global scale, between countries or local districts in one country is possible. However, the highly selected bacterial populatio
Externí odkaz:
https://doaj.org/article/712d9bf1a6f14d8486ef8185911563fe
Publikováno v:
Evolutionary Bioinformatics, Vol 2016, Iss Suppl. 1, Pp 17-23 (2016)
Externí odkaz:
https://doaj.org/article/a95462764da8449fa760c1235745b93d
Autor:
Jiri Sochor, Tunde Jurikova, Miroslav Pohanka, Helena Skutkova, Mojmir Baron, Lenka Tomaskova, Stefan Balla, Borivoj Klejdus, Robert Pokluda, Jiri Mlcek, Zuzana Trojakova, Jan Saloun
Publikováno v:
Molecules, Vol 19, Iss 5, Pp 6504-6523 (2014)
The aim of this study was to evaluate the bioactive substances in 19 berry cultivars of edible honeysuckle (Lonicera edulis). A statistical evaluation was used to determine the relationship between the content of selected bioactive substances and ind
Externí odkaz:
https://doaj.org/article/5c9f6c65a128498c8ee0a55b92db0225
Autor:
Rene Kizek, Ivo Provazník, Vojtech Adam, Boris Krska, Otakar Rop, Petr Babula, Ondrej Zitka, Natalia Cernei, Jiri Sochor, Helena Skutkova
Publikováno v:
Molecules, Vol 16, Iss 9, Pp 7428-7457 (2011)
Functional foods are of interest because of their significant effects on human health, which can be connected with the presence of some biologically important compounds. In this study, we carried out complex analysis of 239 apricot cultivars (Prunus
Externí odkaz:
https://doaj.org/article/3d89596e82b641fb837683971f51fb73