Zobrazeno 1 - 10
of 347
pro vyhledávání: '"Helen M. Berman"'
Publikováno v:
IUCrJ, Vol 7, Iss 4, Pp 630-638 (2020)
The Protein Data Bank (PDB) has grown from a small data resource for crystallographers to a worldwide resource serving structural biology. The history of the growth of the PDB and the role that the community has played in developing standards and pol
Externí odkaz:
https://doaj.org/article/2258d3a16c6943b0a3c7e372d6db0992
Autor:
Stephen K. Burley, Helen M. Berman, Jose M. Duarte, Zukang Feng, Justin W. Flatt, Brian P. Hudson, Robert Lowe, Ezra Peisach, Dennis W. Piehl, Yana Rose, Andrej Sali, Monica Sekharan, Chenghua Shao, Brinda Vallat, Maria Voigt, John D. Westbrook, Jasmine Y. Young, Christine Zardecki
Publikováno v:
Biomolecules, Vol 12, Iss 10, p 1425 (2022)
The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), funded by the United States National Science Foundation, National Institutes of Health, and Department of Energy, supports structural biologists and Protein Data B
Externí odkaz:
https://doaj.org/article/670753c24cbc4a07a6bf385727b5f6ef
Publikováno v:
Life, Vol 12, Iss 4, p 540 (2022)
In this review, we describe the creation of the Nucleic Acid Database (NDB) at Rutgers University and how it became a testbed for the current infrastructure of the RCSB Protein Data Bank. We describe some of the special features of the NDB and how it
Externí odkaz:
https://doaj.org/article/feaea2e244ab43028b11b3ff1bc0ed6c
Publikováno v:
Structural Dynamics, Vol 7, Iss 1, Pp 014701-014701-11 (2020)
Electron cryo-microscopy (cryo-EM) is increasingly being used to determine 3D structures of a broad spectrum of biological specimens from molecules to cells. Anticipating this progress in the early 2000s, an international collaboration of scientists
Externí odkaz:
https://doaj.org/article/8c7e2ad0e77f4f729a0f69b967c7d373
Autor:
Helen M. Berman, Margaret J. Gabanyi, Colin R. Groom, John E. Johnson, Garib N. Murshudov, Robert A. Nicholls, Vijay Reddy, Torsten Schwede, Matthew D. Zimmerman, John Westbrook, Wladek Minor
Publikováno v:
IUCrJ, Vol 2, Iss 1, Pp 45-58 (2015)
Structural and functional studies require the development of sophisticated `Big Data' technologies and software to increase the knowledge derived and ensure reproducibility of the data. This paper presents summaries of the Structural Biology Knowledg
Externí odkaz:
https://doaj.org/article/6928591e4171455bb695cea1e60e9f52
Autor:
Helen M, Berman, George, DeTitta
Publikováno v:
Biophysical Journal. 121:4766-4769
We trace the career path of Nadrian Seeman, the inventor of DNA nanotechnology. The influence of his early training in crystallography and how this led to his success in creating self-assembled crystals are highlighted.
Autor:
Sai J. Ganesan, Carl Kesselman, Maryam Fayazi, Andrej Sali, Hongsuda Tangmunarunkit, Helen M. Berman, Serban Voinea, John D. Westbrook, Brinda Vallat, Benjamin Webb, Catherine L. Lawson
Publikováno v:
Acta Crystallographica. Section D, Structural Biology
Acta crystallographica. Section D, Structural biology, vol 77, iss Pt 12
Acta crystallographica. Section D, Structural biology, vol 77, iss Pt 12
A standalone system, called PDB-Dev, has been developed for archiving integrative structures and making them publicly available. The paper describes the data standards, the software tools and the various components of the PDB-Dev data-collection, pro
Autor:
Brinda Vallat, Gerardo Tauriello, Stefan Bienert, Juergen Haas, Benjamin M. Webb, Augustin Žídek, Wei Zheng, Ezra Peisach, Dennis W. Piehl, Ivan Anischanka, Ian Sillitoe, James Tolchard, Mihaly Varadi, David Baker, Christine Orengo, Yang Zhang, Jeffrey C. Hoch, Genji Kurisu, Ardan Patwardhan, Sameer Velankar, Stephen K. Burley, Andrej Sali, Torsten Schwede, Helen M. Berman, John D. Westbrook
ModelCIF (github.com/ihmwg/ModelCIF) is a data information framework developed for and by computational structural biologists to enable delivery ofFindable, Accessible, Interoperable, andReusable(FAIR) data to users worldwide. It is an extension of t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4c9e257587c0731991f7a08cfd0d716f
https://doi.org/10.1101/2022.12.06.518550
https://doi.org/10.1101/2022.12.06.518550
Autor:
Stephen K. Burley, Helen M. Berman, Wah Chiu, Wei Dai, Justin W. Flatt, Brian P. Hudson, Jason T. Kaelber, Sagar D. Khare, Arkadiusz W. Kulczyk, Catherine L. Lawson, Grigore D. Pintilie, Andrej Sali, Brinda Vallat, John D. Westbrook, Jasmine Y. Young, Christine Zardecki
Publikováno v:
Biophysical reviews.
As a discipline, structural biology has been transformed by the three-dimensional electron microscopy (3DEM) “Resolution Revolution” made possible by convergence of robust cryo-preservation of vitrified biological materials, sample handling syste
Publikováno v:
IUCrJ, Vol 7, Iss 4, Pp 630-638 (2020)
IUCrJ
IUCrJ
The history of the growth of the Protein Data Bank and the role that the community has played in developing standards and policies are described.
The Protein Data Bank (PDB) has grown from a small data resource for crystallographers to a worldwi
The Protein Data Bank (PDB) has grown from a small data resource for crystallographers to a worldwi