Fragmented micro-growth habitats present opportunities for alternative competitive outcomes.

Autor: Batsch M; Department of Fundamental Microbiology, University of Lausanne, CH-1015, Lausanne, Switzerland., Guex I; Department of Mathematics, University of Fribourg, CH-1700, Fribourg, Switzerland., Todorov H; Department of Fundamental Microbiology, University of Lausanne, CH-1015, Lausanne, Switzerland., Heiman CM; Department of Fundamental Microbiology, University of Lausanne, CH-1015, Lausanne, Switzerland., Vacheron J; Department of Fundamental Microbiology, University of Lausanne, CH-1015, Lausanne, Switzerland., Vorholt JA; Institute for Microbiology, Swiss Federal Institute of Technology (ETH Zürich), CH-8049, Zürich, Switzerland., Keel C; Department of Fundamental Microbiology, University of Lausanne, CH-1015, Lausanne, Switzerland., van der Meer JR; Department of Fundamental Microbiology, University of Lausanne, CH-1015, Lausanne, Switzerland. Janroelof.vandermeer@unil.ch.

Publikováno v: Nature communications [Nat Commun] 2024 Aug 31; Vol. 15 (1), pp. 7591. Date of Electronic Publication: 2024 Aug 31.

From microbiome composition to functional engineering, one step at a time.

Autor: Burz SD; Department of Fundamental Microbiology, University of Lausanne, Lausanne, Switzerland., Causevic S; Department of Fundamental Microbiology, University of Lausanne, Lausanne, Switzerland., Dal Co A; Department of Computational Biology, University of Lausanne, Lausanne, Switzerland., Dmitrijeva M; Department of Molecular Life Sciences, University of Zurich, Zurich, Switzerland., Engel P; Department of Fundamental Microbiology, University of Lausanne, Lausanne, Switzerland., Garrido-Sanz D; Department of Fundamental Microbiology, University of Lausanne, Lausanne, Switzerland., Greub G; Institut de microbiologie, CHUV University Hospital Lausanne, Lausanne, Switzerland., Hapfelmeier S; Institute for Infectious Diseases, University of Bern, Bern, Switzerland., Hardt W-D; Institute of Microbiology, ETH Zürich, Zürich, Switzerland., Hatzimanikatis V; Laboratory of Computational Systems Biotechnology, EPF Lausanne, Lausanne, Switzerland., Heiman CM; Department of Fundamental Microbiology, University of Lausanne, Lausanne, Switzerland., Herzog MK-M; Institute of Microbiology, ETH Zürich, Zürich, Switzerland., Hockenberry A; Swiss Federal Institute for Aquatic Research, Dübendorf, Switzerland., Keel C; Department of Fundamental Microbiology, University of Lausanne, Lausanne, Switzerland., Keppler A; Institute of Microbiology, ETH Zürich, Zürich, Switzerland., Lee S-J; Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland., Luneau J; Department of Fundamental Microbiology, University of Lausanne, Lausanne, Switzerland.; Department of Computational Biology, University of Lausanne, Lausanne, Switzerland., Malfertheiner L; Department of Molecular Life Sciences, University of Zurich, Zurich, Switzerland., Mitri S; Department of Fundamental Microbiology, University of Lausanne, Lausanne, Switzerland., Ngyuen B; Institute of Microbiology, ETH Zürich, Zürich, Switzerland., Oftadeh O; Laboratory of Computational Systems Biotechnology, EPF Lausanne, Lausanne, Switzerland., Pacheco AR; Institute of Microbiology, ETH Zürich, Zürich, Switzerland., Peaudecerf F; Institute of Environmental Engineering, ETH Zürich, Zürich, Switzerland., Resch G; Center for Research and Innovation in Clinical Pharmaceutical Sciences, CHUV University Hospital Lausanne, Lausanne, Switzerland., Ruscheweyh H-J; Institute of Microbiology, ETH Zürich, Zürich, Switzerland., Sahin A; Laboratory of Computational Systems Biotechnology, EPF Lausanne, Lausanne, Switzerland., Sanders IR; Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland., Slack E; Department of Health Sciences and Technology, ETH Zürich, Zürich, Switzerland., Sunagawa S; Institute of Microbiology, ETH Zürich, Zürich, Switzerland., Tackmann J; Department of Molecular Life Sciences, University of Zurich, Zurich, Switzerland., Tecon R; Department of Fundamental Microbiology, University of Lausanne, Lausanne, Switzerland., Ugolini GS; Institute of Environmental Engineering, ETH Zürich, Zürich, Switzerland., Vacheron J; Department of Fundamental Microbiology, University of Lausanne, Lausanne, Switzerland., van der Meer JR; Department of Fundamental Microbiology, University of Lausanne, Lausanne, Switzerland., Vayena E; Laboratory of Computational Systems Biotechnology, EPF Lausanne, Lausanne, Switzerland., Vonaesch P; Department of Fundamental Microbiology, University of Lausanne, Lausanne, Switzerland., Vorholt JA; Institute of Microbiology, ETH Zürich, Zürich, Switzerland.

Publikováno v: Microbiology and molecular biology reviews : MMBR [Microbiol Mol Biol Rev] 2023 Dec 20; Vol. 87 (4), pp. e0006323. Date of Electronic Publication: 2023 Nov 10.

Evolutionary and ecological role of extracellular contractile injection systems: from threat to weapon.

Autor: Heiman CM; Department of Fundamental Microbiology, University of Lausanne, Lausanne, Switzerland., Vacheron J; Department of Fundamental Microbiology, University of Lausanne, Lausanne, Switzerland., Keel C; Department of Fundamental Microbiology, University of Lausanne, Lausanne, Switzerland.

Publikováno v: Frontiers in microbiology [Front Microbiol] 2023 Oct 11; Vol. 14, pp. 1264877. Date of Electronic Publication: 2023 Oct 11 (Print Publication: 2023).

Relation of pest insect-killing and soilborne pathogen-inhibition abilities to species diversification in environmental Pseudomonas protegens.

Autor: Garrido-Sanz D; Department of Fundamental Microbiology, University of Lausanne, CH-1015, Lausanne, Switzerland. daniel.garridosanz@unil.ch., Vesga P; Department of Fundamental Microbiology, University of Lausanne, CH-1015, Lausanne, Switzerland. pilar.vesga@upm.es.; Centro de Biotecnología y Genómica de Plantas (CBGP, UPM-INIA), Universidad Politécnica de Madrid (UPM)-Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Madrid, Spain. pilar.vesga@upm.es., Heiman CM; Department of Fundamental Microbiology, University of Lausanne, CH-1015, Lausanne, Switzerland., Altenried A; Department of Fundamental Microbiology, University of Lausanne, CH-1015, Lausanne, Switzerland., Keel C; Department of Fundamental Microbiology, University of Lausanne, CH-1015, Lausanne, Switzerland. christoph.keel@unil.ch., Vacheron J; Department of Fundamental Microbiology, University of Lausanne, CH-1015, Lausanne, Switzerland. jordan.vacheron@unil.ch.

Publikováno v: The ISME journal [ISME J] 2023 Sep; Vol. 17 (9), pp. 1369-1381. Date of Electronic Publication: 2023 Jun 13.

Spatially Restricted Immune Responses Are Required for Maintaining Root Meristematic Activity upon Detection of Bacteria.

Autor: Emonet A; Department of Plant Molecular Biology, University of Lausanne, Biophore, UNIL-Sorge, 1015 Lausanne, Switzerland., Zhou F; Department of Plant Molecular Biology, University of Lausanne, Biophore, UNIL-Sorge, 1015 Lausanne, Switzerland., Vacheron J; Department of Fundamental Microbiology, University of Lausanne, Biophore, UNIL-Sorge, 1015 Lausanne, Switzerland., Heiman CM; Department of Fundamental Microbiology, University of Lausanne, Biophore, UNIL-Sorge, 1015 Lausanne, Switzerland., Dénervaud Tendon V; Department of Plant Molecular Biology, University of Lausanne, Biophore, UNIL-Sorge, 1015 Lausanne, Switzerland., Ma KW; Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, 50829 Cologne, Germany., Schulze-Lefert P; Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, 50829 Cologne, Germany., Keel C; Department of Fundamental Microbiology, University of Lausanne, Biophore, UNIL-Sorge, 1015 Lausanne, Switzerland., Geldner N; Department of Plant Molecular Biology, University of Lausanne, Biophore, UNIL-Sorge, 1015 Lausanne, Switzerland. Electronic address: niko.geldner@unil.ch.

Publikováno v: Current biology : CB [Curr Biol] 2021 Mar 08; Vol. 31 (5), pp. 1012-1028.e7. Date of Electronic Publication: 2021 Jan 27.