Zobrazeno 1 - 10
of 26
pro vyhledávání: '"Heather E Machado"'
Autor:
Heather E Machado, Alan O Bergland, Ryan Taylor, Susanne Tilk, Emily Behrman, Kelly Dyer, Daniel K Fabian, Thomas Flatt, Josefa González, Talia L Karasov, Bernard Kim, Iryna Kozeretska, Brian P Lazzaro, Thomas JS Merritt, John E Pool, Katherine O'Brien, Subhash Rajpurohit, Paula R Roy, Stephen W Schaeffer, Svitlana Serga, Paul Schmidt, Dmitri A Petrov
Publikováno v:
eLife, Vol 10 (2021)
To advance our understanding of adaptation to temporally varying selection pressures, we identified signatures of seasonal adaptation occurring in parallel among Drosophila melanogaster populations. Specifically, we estimated allele frequencies genom
Externí odkaz:
https://doaj.org/article/ea3104389bfa47cb921bd26e99323fe8
Autor:
Heather E. Machado, Nina F. Øbro, Nicholas Williams, Shengjiang Tan, Ahmed Z. Boukerrou, Megan Davies, Miriam Belmonte, Emily Mitchell, E. Joanna Baxter, Nicole Mende, Anna Clay, Philip Ancliff, Jutta Köglmeier, Sally B. Killick, Austin Kulasekararaj, Stefan Meyer, Elisa Laurenti, Peter J. Campbell, David G. Kent, Jyoti Nangalia, Alan J. Warren
Publikováno v:
Nature Communications, Vol 14, Iss 1, Pp 1-14 (2023)
Abstract Clonal tracking of cells using somatic mutations permits exploration of clonal dynamics in human disease. Here, we perform whole genome sequencing of 323 haematopoietic colonies from 10 individuals with the inherited ribosomopathy Shwachman-
Externí odkaz:
https://doaj.org/article/83d4535580c848179ab239f1596e4673
Publikováno v:
Genetics. 214:511-528
Codon usage bias (CUB), where certain codons are used more frequently than expected by chance, is a ubiquitous phenomenon and occurs across the tree of life. The dominant paradigm is that the proportion of preferred codons is set by weak selection. W
Autor:
Heather E Machado, Alan O Bergland, Ryan Taylor, Susanne Tilk, Emily Behrman, Kelly Dyer, Daniel K Fabian, Thomas Flatt, Josefa González, Talia L Karasov, Bernard Kim, Iryna Kozeretska, Brian P Lazzaro, Thomas JS Merritt, John E Pool, Katherine O'Brien, Subhash Rajpurohit, Paula R Roy, Stephen W Schaeffer, Svitlana Serga, Paul Schmidt, Dmitri A Petrov
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::bdf9756d0ecb1fca78dd44835d3d637b
https://doi.org/10.7554/elife.67577.sa2
https://doi.org/10.7554/elife.67577.sa2
Autor:
Francesco Maura, Michael Davies, Miriam Belmonte, Alex Cagan, Craig McDonald, Robert J. Osborne, Mairi Shepherd, Peter J. Campbell, Emily G. Mitchell, Daniel Leongamornlert, Andrew Green, K Kübler, Kourosh Saeb-Parsy, Elisa Laurenti, Heather E. Machado, Inigo Martincorena, David G. Kent, Mathijs A. Sanders, Gad Getz, Daniel J. Hodson, Nina F. Øbro, Krishnaa T. Mahbubani, Paz Polak
A lymphocyte suffers many threats to its genome, including programmed mutation during differentiation, antigen-driven proliferation and residency in diverse microenvironments. After developing protocols for single-cell lymphocyte expansions, we seque
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::bd4b87c00090a2a777e88893f0c3c79b
https://doi.org/10.1101/2021.04.29.441939
https://doi.org/10.1101/2021.04.29.441939
Autor:
Josefa González, Eliza Argyridou, Marija Tanasković, Margot Paris, Sonja Grath, J. Roberto Torres, Elena Pasyukova, Thomas Flatt, Subhash Rajpurohit, Maaria Kankare, Stephen W. Schaeffer, Antonio J. Buendía-Ruíz, Svitlana Serga, Vivien Horváth, Emily L. Behrman, Eva Puerma, Iryna Kozeretska, Jessica K. Abbott, Paul S. Schmidt, Anna Ullastres, M. Luisa Espinosa-Jimenez, Jorge Vieira, Yun Wang, Martin Kapun, Catherine Montchamp-Moreau, Jesús Murga-Moreno, Lain Guio, Joseph Outten, M. Josefa Gómez-Julián, María Bogaerts-Márquez, Christopher W. Wheat, Sònia Casillas, Brian P. Lazzaro, Volker Loeschcke, Sara Guirao-Rico, Dorcas J. Orengo, Miriam Merenciano, Banu Sebnem Onder, Omar Rota-Stabelli, Marta Coronado-Zamora, Darren J. Obbard, Katarina Eric, Lino Ometto, John Parsch, Oleksandr M. Maistrenko, Mads Fristrup Schou, Antonio Barbadilla, Vladimir E. Alatortsev, Thomas J.S. Merritt, Alan O. Bergland, Daniel K. Fabian, Heather E. Machado, Marina Stamenkovic-Radak, D. V. Mukha, Courtney Tern, Aleksandra Patenkovic, Dmitri A. Petrov, Kelly A. Dyer, Cristina P. Vieira, Joaquin C. B. Nunez, Francisco D. Gallardo-Jiménez, Marija Savic Veselinovic, Fabian Staubach, Maria Pilar Garcia Guerreiro, Mihailo Jelić, Eran Tauber, Amanda Glaser-Schmitt
Drosophila melanogaster is a leading model in population genetics and genomics, and a growing number of whole-genome datasets from natural populations of this species have been published over the last 20 years. A major challenge is the integration of
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::d96b61bd64bce3668621bace562bf7c1
https://doi.org/10.1101/2021.02.01.428994
https://doi.org/10.1101/2021.02.01.428994
Autor:
Dmitri A. Petrov, Heather E. Machado, Josefa González, Marta Coronado, Martin Kapun, Margot Paris, Joaquin C. B. Nunez, Maria Bogaerts, Alan O. Bergland, Paul Schmidt, Thomas Flatt
This note details the consortium’s rationale behind its decision to modify the metadata for putatively misidentified European samples in the DrosRTEC dataset. In brief, we use PCA on published datasets from North America and Europe to generate phyl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ef2574e0b70de6d1e1bc58ea6b327915
https://doi.org/10.1101/2021.01.26.428249
https://doi.org/10.1101/2021.01.26.428249
Autor:
Emily L. Behrman, Iryna Kozeretska, Talia L. Karasov, Paul S. Schmidt, Thomas Flatt, Brian P. Lazzaro, Svitlana Serga, Stephen W. Schaeffer, Paula R. Roy, Dmitri A. Petrov, Daniel K. Fabian, Susanne Tilk, Subhash Rajpurohit, Bernard Y. Kim, John E. Pool, Thomas J.S. Merritt, Josefa González, Katherine R. O'Brien, Ryan W. Taylor, Kelly A. Dyer, Alan O. Bergland, Heather E. Machado
Publikováno v:
Digital.CSIC. Repositorio Institucional del CSIC
instname
eLife
eLife, Vol 10 (2021)
instname
eLife
eLife, Vol 10 (2021)
To advance our understanding of adaptation to temporally varying selection pressures, we identified signatures of seasonal adaptation occurring in parallel among Drosophila melanogaster populations. Specifically, we estimated allele frequencies genom
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e3b886df81e4e241c7c017401098dc87
http://hdl.handle.net/10261/251224
http://hdl.handle.net/10261/251224
Autor:
Michael R. Stratton, Krishnaa T. Mahubani, Raheleh Rahbari, Sigurgeir Olafsson, Kourosh Saeb-Parsy, Emily G. Mitchell, Eugene Jing Kwa, Alex Cagan, David G. Kent, Heather E. Machado, Robert J. Osborne, David T. Jones, Peter J. Campbell, Andrew Russell, Michael Spencer Chapman, Elisa Laurenti, Tim H. H. Coorens, Megan Davies, Yichen Wang, Steven Leonard, Henry Lee-Six, Nina F. Øbro, Adrian Baez-Ortega, Peter R. Ellis, Luke M. R. Harvey, Kieren Allinson, Stefanie V Lensing, Andrew R. J. Lawson, Moritz Gerstung, Federico Abascal, Raul E. Alcantara, Inigo Martincorena
Publikováno v:
Nature
Cell Res
Cell Res
Somatic mutations drive the development of cancer and may contribute to ageing and other diseases1,2. Despite their importance, the difficulty of detecting mutations that are only present in single cells or small clones has limited our knowledge of s
Autor:
Sara Guirao-Rico, Jessica K. Abbott, Lain Guio, Amanda Glaser-Schmitt, J. Roberto Torres, Marina Stamenkovic-Radak, Subhash Rajpurohit, Aleksandra Patenkovic, Darren J. Obbard, Jesús Murga-Moreno, Joaquin C. B. Nunez, Daniel K. Fabian, D. V. Mukha, Courtney Tern, Martin Kapun, Sonja Grath, Banu Sebnem Onder, Eva Puerma, María Bogaerts-Márquez, Sònia Casillas, Brian P. Lazzaro, Marija Tanasković, Oleksandr M. Maistrenko, Anna Ullastres, Catherine Montchamp-Moreau, Joseph Outten, M. Josefa Gómez-Julián, Stephen W. Schaeffer, Jorge Vieira, Vladimir E. Alatortsev, Yun Wang, Francisco D. Gallardo-Jiménez, Mihailo Jelić, Vivien Horváth, Elena Pasyukova, Eran Tauber, Thomas J.S. Merritt, Antonio Barbadilla, Dorcas J. Orengo, Mads Fristrup Schou, Miriam Merenciano, Josefa González, Keric Lamb, Omar Rota-Stabelli, Marta Coronado-Zamora, Tânia F. Paulo, Cristina P. Vieira, Marija Savic Veselinovic, Lino Ometto, Maria Pilar Garcia Guerreiro, Margot Paris, Emily L. Behrman, Thomas Flatt, Antonio J. Buendía-Ruíz, Iryna Kozeretska, Svitlana Serga, John Parsch, Kelly A. Dyer, Leeban Yusuf, Paul S. Schmidt, M. Luisa Espinosa-Jimenez, Volker Loeschcke, Heather E. Machado, Fabian Staubach, Katarina Eric, Eliza Argyridou, Alan O. Bergland, Maaria Kankare, Dmitri A. Petrov, Christopher W. Wheat
Publikováno v:
Kapun, M, Nunez, J C B, Bogaerts-Márquez, M, Murga-Moreno, J, Paris, M, Outten, J, Coronado-Zamora, M, Tern, C, Rota-Stabelli, O, García Guerreiro, M P, Casillas, S, Orengo, D J, Puerma, E, Kankare, M, Ometto, L, Loeschcke, V, Onder, B S, Abbott, J K, Schaeffer, S W, Rajpurohit, S, Behrman, E L, Schou, M F, Merritt, T J S, Lazzaro, B P, Glaser-Schmitt, A, Argyridou, E, Staubach, F, Wang, Y, Tauber, E, Serga, S V, Fabian, D K, Dyer, K A, Wheat, C W, Parsch, J, Grath, S, Veselinovic, M S, Stamenkovic-Radak, M, Jelic, M, Buendía-Ruíz, A J, Gómez-Julián, M J, Espinosa-Jimenez, M L, Gallardo-Jiménez, F D, Patenkovic, A, Eric, K, Tanaskovic, M, Ullastres, A, Guio, L, Merenciano, M, Guirao-Rico, S & Horváth, V 2021, ' Drosophila Evolution over Space and Time (DEST) : A New Population Genomics Resource ', Molecular Biology and Evolution, vol. 38, no. 12, pp. 5782-5805 . https://doi.org/10.1093/molbev/msab259
Kapun, M, Nunez, J C B, Bogaerts-Márquez, M, Murga Moreno, J, Paris, M, Outten, J, Coronado Zamora, M, Tern, C, Rota-Stabelli, O, Garcia Guerreiro, M P, Casillas, S, Orengo, D J, Puerma, E, Kankare, M, Ometto, L, Loeschcke, V, Sebnem Onder, B, Abbott, J, Schaeffer, S W, Rajpurohit, S, Behrman, E L, Schou, M F, Merritt, T J S, Lazzaro, B P, Glaser Schmitt, A, Argyridou, E, Staubach, F, Wang, Y, Tauber, E, Serga, S, Fabian, D K, Dyer, K A, Wheat, C W, Parsch, J, Grath, S, Savic Veselinovic, M, Stamenkovic Radak, M, Jelic, M, Buendía Ruíz, A J, Gómez Julián, M J, Espinosa Jimenez, M L, Gallardo Jiménez, F D, Patenkovic, A, Eric, K, Tanaskovic, M, Ullastres, A, Guio, L, Merenciano, M, Guirao Rico, S, Horváth, V, Obbard, D J, Pasyukova, E G, Alatortsev, V E, Vieira, C P, Vieira, J, Torres, J R, Kozeretska, I, Maistrenko, O M, Montchamp-Moreau, C, Mukha, D V, Machado, H E, Lamb, K, Paulo, T, Yusuf, L, Barbadilla, A, Petrov, D, Schmidt, P S, González, J, Flatt, T & Bergland, A O 2021, ' Drosophila evolution over space and time (DEST) : A new population genomics resource ', Molecular Biology and Evolution, vol. 38, no. 12, msab259, pp. 5782–5805 . https://doi.org/10.1093/molbev/msab259
Molecular Biology and Evolution
Digital.CSIC. Repositorio Institucional del CSIC
instname
Kapun, M, Nunez, J C B, Bogaerts-Márquez, M, Murga Moreno, J, Paris, M, Outten, J, Coronado Zamora, M, Tern, C, Rota-Stabelli, O, Garcia Guerreiro, M P, Casillas, S, Orengo, D J, Puerma, E, Kankare, M, Ometto, L, Loeschcke, V, Sebnem Onder, B, Abbott, J, Schaeffer, S W, Rajpurohit, S, Behrman, E L, Schou, M F, Merritt, T J S, Lazzaro, B P, Glaser Schmitt, A, Argyridou, E, Staubach, F, Wang, Y, Tauber, E, Serga, S, Fabian, D K, Dyer, K A, Wheat, C W, Parsch, J, Grath, S, Savic Veselinovic, M, Stamenkovic Radak, M, Jelic, M, Buendía Ruíz, A J, Gómez Julián, M J, Espinosa Jimenez, M L, Gallardo Jiménez, F D, Patenkovic, A, Eric, K, Tanaskovic, M, Ullastres, A, Guio, L, Merenciano, M, Guirao Rico, S, Horváth, V, Obbard, D J, Pasyukova, E G, Alatortsev, V E, Vieira, C P, Vieira, J, Torres, J R, Kozeretska, I, Maistrenko, O M, Montchamp-Moreau, C, Mukha, D V, Machado, H E, Lamb, K, Paulo, T, Yusuf, L, Barbadilla, A, Petrov, D, Schmidt, P S, González, J, Flatt, T & Bergland, A O 2021, ' Drosophila evolution over space and time (DEST) : A new population genomics resource ', Molecular Biology and Evolution, vol. 38, no. 12, msab259, pp. 5782–5805 . https://doi.org/10.1093/molbev/msab259
Molecular Biology and Evolution
Digital.CSIC. Repositorio Institucional del CSIC
instname
Drosophila melanogaster is a leading model in population genetics and genomics, and a growing number of whole-genome datasets from natural populations of this species have been published over the last years. A major challenge is the integration of di
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::74616d77d13cf6c0c1345dcd3462a538
http://urn.fi/URN:NBN:fi:jyu-202112236157
http://urn.fi/URN:NBN:fi:jyu-202112236157