MICADo - Looking for mutations in targeted PacBio cancer data: an alignment-free method

Autor: Justine Rudewicz, Hayssam Soueidan, Raluca Uricaru, Hervé Bonnefoi, Richard Iggo, Jonas Bergh, Macha Nikolski

Publikováno v: Frontiers in Genetics, Vol 7 (2016)

Targeted sequencing is commonly used in clinical application of NGS technology since it enables generation of sufficient sequencing depth in the targeted genes of interest and thus ensures the best possible downstream analysis. This notwithstanding,

Externí odkaz: https://doaj.org/article/bec553b4b9a243c3a6fe9467b174d581

Supplemental Table 2 from Sensitizing Triple-Negative Breast Cancer to PI3K Inhibition by Cotargeting IGF1R

Autor: Roderick L. Beijersbergen, Lodewyk F.A. Wessels, Cor Lieftink, Jordi Vidal Rodriguez, Katarzyna Jastrzebski, Hayssam Soueidan, Jos B. Poell, Klaas de Lint

RNAseq read counts of IGF1R related genes in the TNBC cell line panel

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b89d521dc67d530f1514e1342a40bffd
https://doi.org/10.1158/1535-7163.22508071

Supplemental Table 1 from Sensitizing Triple-Negative Breast Cancer to PI3K Inhibition by Cotargeting IGF1R

Autor: Roderick L. Beijersbergen, Lodewyk F.A. Wessels, Cor Lieftink, Jordi Vidal Rodriguez, Katarzyna Jastrzebski, Hayssam Soueidan, Jos B. Poell, Klaas de Lint

Oligonucleotide sequences used in PCR reactions

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::37c47e27be429ed51140ebd04ba17069
https://doi.org/10.1158/1535-7163.22508074.v1

Supplemental Table 4 from Sensitizing Triple-Negative Breast Cancer to PI3K Inhibition by Cotargeting IGF1R

Autor: Roderick L. Beijersbergen, Lodewyk F.A. Wessels, Cor Lieftink, Jordi Vidal Rodriguez, Katarzyna Jastrzebski, Hayssam Soueidan, Jos B. Poell, Klaas de Lint

The correlation between Î"AUC and IGF1R mRNA and protein

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c6c6c4a88c886a9fcc56bd412cd7f83e
https://doi.org/10.1158/1535-7163.22508065.v1

Interrogating RNA and protein spatial subcellular distribution in smFISH data with DypFISH

Autor: Jan Schmoranzer, Nicolas Beaume, Mafalda R. Pimentel, Jonathan Warrell, Macha Nikolski, Anca F. Savulescu, Mikaël Boulle, Emmanuel Bouilhol, Edgar R. Gomes, Stephane Dallongeville, Fabrice Agou, Jean-Christophe Olivo-Marin, Musa M. Mhlanga, Isabela C Fortunato, Claudio A. Franco, Hayssam Soueidan, Benjamin Dartigues, Robyn Brackin

Publikováno v: Cell Reports Methods
Cell Reports Methods, 2021, 1 (5), pp.100068. ⟨10.1016/j.crmeth.2021.100068⟩
Cell Reports Methods, 1, 5, pp. 1-30
Cell Reports Methods, 1, 1-30
Cell Reports Methods, Cell Press Elsevier, In press, ⟨10.1016/j.crmeth.2021.100068⟩

International audience; Advances in single-cell RNA sequencing have allowed for the identification of cellular subtypes on the basis of quantification of the number of transcripts in each cell. However, cells might also differ in the spatial distribu

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::45a3705a6d4773860f9a8b56164911b0
https://doi.org/10.1016/j.crmeth.2021.100068