Production of Odd-Carbon Dicarboxylic Acids in Escherichia coli Using an Engineered Biotin-Fatty Acid Biosynthetic Pathway

Autor: Haushalter, RW, Phelan, RM, Hoh, KM, Su, C, Wang, G, Baidoo, EEK, Keasling, JD

Publikováno v: Haushalter, RW; Phelan, RM; Hoh, KM; Su, C; Wang, G; Baidoo, EEK; et al.(2017). Production of Odd-Carbon Dicarboxylic Acids in Escherichia coli Using an Engineered Biotin-Fatty Acid Biosynthetic Pathway. Journal of the American Chemical Society, 139(13), 4615-4618. doi: 10.1021/jacs.6b11895. UC Berkeley: Retrieved from: http://www.escholarship.org/uc/item/92n963qq

© 2017 American Chemical Society. Dicarboxylic acids are commodity chemicals used in the production of plastics, polyesters, nylons, fragrances, and medications. Bio-based routes to dicarboxylic acids are gaining attention due to environmental conce

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______325::41d3eb1d4cb6e52edc8eb77a8a47673f
http://www.escholarship.org/uc/item/92n963qq

Automated Platform for the Plasmid Construction Process.

Autor: Nava AA; Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, California 94608, United States.; Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States.; Department of Chemical and Biomolecular Engineering, University of California, Berkeley, Berkeley, California 94720, United States., Fear AL; Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, California 94608, United States.; Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States., Lee N; Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, California 94608, United States.; Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States., Mellinger P; Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, California 94608, United States.; Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States., Lan G; Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, California 94608, United States.; Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States., McCauley J; Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, California 94608, United States.; Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States.; DOE Agile BioFoundry, Emeryville, California 94608, United States., Tan S; Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, California 94608, United States.; Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States.; DOE Agile BioFoundry, Emeryville, California 94608, United States., Kaplan N; Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, California 94608, United States.; Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States.; DOE Agile BioFoundry, Emeryville, California 94608, United States., Goyal G; Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, California 94608, United States.; Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States.; DOE Agile BioFoundry, Emeryville, California 94608, United States., Coates RC; Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, California 94608, United States.; Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States.; DOE Agile BioFoundry, Emeryville, California 94608, United States., Roberts J; Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, California 94608, United States.; Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States.; Department of Bioengineering, University of California, Berkeley, Berkeley, California 94720, United States., Johnson Z; Department of Chemical and Biomolecular Engineering, University of California, Berkeley, Berkeley, California 94720, United States., Hu R; Department of Bioengineering, University of California, Berkeley, Berkeley, California 94720, United States., Wu B; Department of Bioengineering, University of California, Berkeley, Berkeley, California 94720, United States., Ahn J; Department of Bioengineering, University of California, Berkeley, Berkeley, California 94720, United States., Kim WE; Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, California 94608, United States.; Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States., Wan Y; Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, California 94608, United States.; Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States., Yin K; Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, California 94608, United States.; Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States.; Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California 94720, United States., Hillson N; Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, California 94608, United States.; Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States.; DOE Agile BioFoundry, Emeryville, California 94608, United States., Haushalter RW; Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, California 94608, United States.; Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States., Keasling JD; Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, California 94608, United States.; Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States.; Department of Chemical and Biomolecular Engineering, University of California, Berkeley, Berkeley, California 94720, United States.; Department of Bioengineering, University of California, Berkeley, Berkeley, California 94720, United States.; Center for Synthetic Biochemistry, Shenzhen Institutes for Advanced Technologies, Shenzhen 518055, P.R. China.; The Novo Nordisk Foundation Center for Biosustainability, Technical University Denmark, Kemitorvet, Building 220, Kongens Lyngby 2800, Denmark.

Publikováno v: ACS synthetic biology [ACS Synth Biol] 2023 Dec 15; Vol. 12 (12), pp. 3506-3513. Date of Electronic Publication: 2023 Nov 10.

Maximizing Heterologous Expression of Engineered Type I Polyketide Synthases: Investigating Codon Optimization Strategies.

Autor: Schmidt M; Joint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.; Biological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States.; Institute of Applied Microbiology (iAMB), Aachen Biology and Biotechnology (ABBt), RWTH Aachen University, 52062 Aachen, Germany.; California Institute for Quantitative Biosciences (QB3), University of California, Berkeley, California 94720, United States., Lee N; Joint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.; Biological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States.; California Institute for Quantitative Biosciences (QB3), University of California, Berkeley, California 94720, United States., Zhan C; Joint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.; Biological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States., Roberts JB; Joint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.; Biological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States.; Joint Program in Bioengineering, University of California, Berkeley, California 94720, United States., Nava AA; Joint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.; Biological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States.; Department of Chemical and Biomolecular Engineering, University of California, Berkeley, California 94720, United States., Keiser LS; Joint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.; Biological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States.; Department of Chemical and Biomolecular Engineering, University of California, Berkeley, California 94720, United States., Vilchez AA; Joint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.; Biological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States.; Department of Chemical and Biomolecular Engineering, University of California, Berkeley, California 94720, United States., Chen Y; Joint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.; Biological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States., Petzold CJ; Joint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.; Biological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States., Haushalter RW; Joint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.; Biological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States., Blank LM; Institute of Applied Microbiology (iAMB), Aachen Biology and Biotechnology (ABBt), RWTH Aachen University, 52062 Aachen, Germany., Keasling JD; Joint BioEnergy Institute, 5885 Hollis Street, Emeryville, California 94608, United States.; Biological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States.; Joint Program in Bioengineering, University of California, Berkeley, California 94720, United States.; Department of Chemistry, University of California, Berkeley, California 94720, United States.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States.; Department of Chemical and Biomolecular Engineering, University of California, Berkeley, California 94720, United States.; The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark.; Center for Synthetic Biochemistry, Institute for Synthetic Biology, Shenzhen Institutes for Advanced Technologies, Shenzhen 518071, China.

Publikováno v: ACS synthetic biology [ACS Synth Biol] 2023 Nov 17; Vol. 12 (11), pp. 3366-3380. Date of Electronic Publication: 2023 Oct 18.

Advanced one-pot deconstruction and valorization of lignocellulosic biomass into triacetic acid lactone using Rhodosporidium toruloides.

Autor: Otoupal PB; Biomanufacturing and Biomaterials Department, Sandia National Laboratories, Livermore, CA, USA.; DOE Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, CA, USA.; Agile BioFoundry, Department of Energy, Emeryville, CA, USA., Geiselman GM; Biomanufacturing and Biomaterials Department, Sandia National Laboratories, Livermore, CA, USA.; DOE Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, CA, USA.; Agile BioFoundry, Department of Energy, Emeryville, CA, USA., Oka AM; Advanced Biofuels and Bioproducts Process Development Unit, Lawrence Berkeley National Laboratory, Emeryville, CA, USA.; Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Barcelos CA; Advanced Biofuels and Bioproducts Process Development Unit, Lawrence Berkeley National Laboratory, Emeryville, CA, USA.; Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Choudhary H; Biomanufacturing and Biomaterials Department, Sandia National Laboratories, Livermore, CA, USA.; DOE Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, CA, USA., Dinh D; Advanced Biofuels and Bioproducts Process Development Unit, Lawrence Berkeley National Laboratory, Emeryville, CA, USA.; Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Zhong W; Advanced Biofuels and Bioproducts Process Development Unit, Lawrence Berkeley National Laboratory, Emeryville, CA, USA.; Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Hwang H; Biomanufacturing and Biomaterials Department, Sandia National Laboratories, Livermore, CA, USA.; Agile BioFoundry, Department of Energy, Emeryville, CA, USA., Keasling JD; DOE Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, CA, USA.; Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Department of Chemical & Biomolecular Engineering, University of California, Berkeley, Berkeley, CA, USA.; Department of Bioengineering, University of California, Berkeley, Berkeley, CA, USA.; Center for Biosustainability, Danish Technical University, Lyngby, Denmark.; Center for Synthetic Biochemistry, Institute for Synthetic Biology, Shenzhen Institute of Advanced Technology, Shenzhen, China., Mukhopadhyay A; Biomanufacturing and Biomaterials Department, Sandia National Laboratories, Livermore, CA, USA.; Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Sundstrom E; Advanced Biofuels and Bioproducts Process Development Unit, Lawrence Berkeley National Laboratory, Emeryville, CA, USA.; Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Haushalter RW; DOE Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, CA, USA.; Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Sun N; Advanced Biofuels and Bioproducts Process Development Unit, Lawrence Berkeley National Laboratory, Emeryville, CA, USA.; Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Simmons BA; DOE Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, CA, USA.; Agile BioFoundry, Department of Energy, Emeryville, CA, USA.; Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Gladden JM; Biomanufacturing and Biomaterials Department, Sandia National Laboratories, Livermore, CA, USA. jmgladden@lbl.gov.; DOE Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, CA, USA. jmgladden@lbl.gov.; Agile BioFoundry, Department of Energy, Emeryville, CA, USA. jmgladden@lbl.gov.

Publikováno v: Microbial cell factories [Microb Cell Fact] 2022 Dec 08; Vol. 21 (1), pp. 254. Date of Electronic Publication: 2022 Dec 08.

An iron (II) dependent oxygenase performs the last missing step of plant lysine catabolism.

Autor: Thompson MG; Joint BioEnergy Institute, Emeryville, CA, USA.; Biological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Department of Plant and Microbial Biology, University of California-Berkeley, Berkeley, CA, USA., Blake-Hedges JM; Joint BioEnergy Institute, Emeryville, CA, USA.; Biological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Department of Chemistry, University of California-Berkeley, Berkeley, CA, USA., Pereira JH; Joint BioEnergy Institute, Emeryville, CA, USA.; Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Hangasky JA; Department of Chemistry, University of California-Berkeley, Berkeley, CA, USA., Belcher MS; Joint BioEnergy Institute, Emeryville, CA, USA.; Biological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Department of Plant and Microbial Biology, University of California-Berkeley, Berkeley, CA, USA., Moore WM; Joint BioEnergy Institute, Emeryville, CA, USA.; Biological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Department of Plant and Microbial Biology, University of California-Berkeley, Berkeley, CA, USA., Barajas JF; Joint BioEnergy Institute, Emeryville, CA, USA.; Biological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Department of Energy Agile BioFoundry, Emeryville, CA, USA., Cruz-Morales P; Joint BioEnergy Institute, Emeryville, CA, USA.; Biological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Washington LJ; Joint BioEnergy Institute, Emeryville, CA, USA.; Biological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Department of Plant and Microbial Biology, University of California-Berkeley, Berkeley, CA, USA., Haushalter RW; Joint BioEnergy Institute, Emeryville, CA, USA.; Biological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Eiben CB; Joint BioEnergy Institute, Emeryville, CA, USA.; Biological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Department of Bioengineering, University of California-Berkeley, Berkeley, CA, 94720, USA., Liu Y; Joint BioEnergy Institute, Emeryville, CA, USA.; Biological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Skyrud W; Department of Chemistry, University of California-Berkeley, Berkeley, CA, USA., Benites VT; Joint BioEnergy Institute, Emeryville, CA, USA.; Biological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Barnum TP; Department of Plant and Microbial Biology, University of California-Berkeley, Berkeley, CA, USA., Baidoo EEK; Joint BioEnergy Institute, Emeryville, CA, USA.; Biological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Scheller HV; Joint BioEnergy Institute, Emeryville, CA, USA.; Biological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Department of Plant and Microbial Biology, University of California-Berkeley, Berkeley, CA, USA., Marletta MA; Department of Chemistry, University of California-Berkeley, Berkeley, CA, USA.; Department of Molecular and Cellular Biology, University of California-Berkeley, Berkeley, CA, USA., Shih PM; Joint BioEnergy Institute, Emeryville, CA, USA.; Biological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Department of Plant Biology, University of California-Davis, Davis, CA, USA.; Genome Center, University of California-Davis, Davis, CA, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Adams PD; Joint BioEnergy Institute, Emeryville, CA, USA.; Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Department of Bioengineering, University of California-Berkeley, Berkeley, CA, 94720, USA., Keasling JD; Joint BioEnergy Institute, Emeryville, CA, USA. jdkeasling@lbl.gov.; Biological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA. jdkeasling@lbl.gov.; Department of Bioengineering, University of California-Berkeley, Berkeley, CA, 94720, USA. jdkeasling@lbl.gov.; Department of Chemical and Biomolecular Engineering, University of California-Berkeley, Berkeley, CA, USA. jdkeasling@lbl.gov.; The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Lyngby, Denmark. jdkeasling@lbl.gov.; Center for Synthetic Biochemistry, Shenzhen Institutes for Advanced Technologies, Shenzhen, China. jdkeasling@lbl.gov.

Publikováno v: Nature communications [Nat Commun] 2020 Jun 10; Vol. 11 (1), pp. 2931. Date of Electronic Publication: 2020 Jun 10.