Zobrazeno 1 - 10
of 155
pro vyhledávání: '"Harris, Nomi L"'
Autor:
Joachimiak, Marcin P., Miller, Mark A., Caufield, J. Harry, Ly, Ryan, Harris, Nomi L., Tritt, Andrew, Mungall, Christopher J., Bouchard, Kristofer E.
The Artificial Intelligence Ontology (AIO) is a systematization of artificial intelligence (AI) concepts, methodologies, and their interrelations. Developed via manual curation, with the additional assistance of large language models (LLMs), AIO aims
Externí odkaz:
http://arxiv.org/abs/2404.03044
Autor:
Toro, Sabrina, Anagnostopoulos, Anna V, Bello, Sue, Blumberg, Kai, Cameron, Rhiannon, Carmody, Leigh, Diehl, Alexander D, Dooley, Damion, Duncan, William, Fey, Petra, Gaudet, Pascale, Harris, Nomi L, Joachimiak, Marcin, Kiani, Leila, Lubiana, Tiago, Munoz-Torres, Monica C, O'Neil, Shawn, Osumi-Sutherland, David, Puig, Aleix, Reese, Justin P, Reiser, Leonore, Robb, Sofia, Ruemping, Troy, Seager, James, Sid, Eric, Stefancsik, Ray, Weber, Magalie, Wood, Valerie, Haendel, Melissa A, Mungall, Christopher J
Background: Ontologies are fundamental components of informatics infrastructure in domains such as biomedical, environmental, and food sciences, representing consensus knowledge in an accurate and computable form. However, their construction and main
Externí odkaz:
http://arxiv.org/abs/2312.10904
Autor:
Matentzoglu, Nicolas, Caufield, J. Harry, Hegde, Harshad B., Reese, Justin T., Moxon, Sierra, Kim, Hyeongsik, Harris, Nomi L., Haendel, Melissa A, Mungall, Christopher J.
Aligning terminological resources, including ontologies, controlled vocabularies, taxonomies, and value sets is a critical part of data integration in many domains such as healthcare, chemistry, and biomedical research. Entity mapping is the process
Externí odkaz:
http://arxiv.org/abs/2310.03666
Autor:
Joachimiak, Marcin P., Caufield, J. Harry, Harris, Nomi L., Kim, Hyeongsik, Mungall, Christopher J.
Molecular biologists frequently interpret gene lists derived from high-throughput experiments and computational analysis. This is typically done as a statistical enrichment analysis that measures the over- or under-representation of biological functi
Externí odkaz:
http://arxiv.org/abs/2305.13338
Autor:
Caufield, J. Harry, Hegde, Harshad, Emonet, Vincent, Harris, Nomi L., Joachimiak, Marcin P., Matentzoglu, Nicolas, Kim, HyeongSik, Moxon, Sierra A. T., Reese, Justin T., Haendel, Melissa A., Robinson, Peter N., Mungall, Christopher J.
Creating knowledge bases and ontologies is a time consuming task that relies on a manual curation. AI/NLP approaches can assist expert curators in populating these knowledge bases, but current approaches rely on extensive training data, and are not a
Externí odkaz:
http://arxiv.org/abs/2304.02711
Autor:
Caufield, J Harry, Putman, Tim, Schaper, Kevin, Unni, Deepak R, Hegde, Harshad, Callahan, Tiffany J, Cappelletti, Luca, Moxon, Sierra AT, Ravanmehr, Vida, Carbon, Seth, Chan, Lauren E, Cortes, Katherina, Shefchek, Kent A, Elsarboukh, Glass, Balhoff, James P, Fontana, Tommaso, Matentzoglu, Nicolas, Bruskiewich, Richard M, Thessen, Anne E, Harris, Nomi L, Munoz-Torres, Monica C, Haendel, Melissa A, Robinson, Peter N, Joachimiak, Marcin P, Mungall, Christopher J, Reese, Justin T
Knowledge graphs (KGs) are a powerful approach for integrating heterogeneous data and making inferences in biology and many other domains, but a coherent solution for constructing, exchanging, and facilitating the downstream use of knowledge graphs i
Externí odkaz:
http://arxiv.org/abs/2302.10800
Autor:
Matentzoglu, Nicolas, Goutte-Gattat, Damien, Tan, Shawn Zheng Kai, Balhoff, James P., Carbon, Seth, Caron, Anita R., Duncan, William D., Flack, Joe E., Haendel, Melissa, Harris, Nomi L., Hogan, William R, Hoyt, Charles Tapley, Jackson, Rebecca C., Kim, HyeongSik, Kir, Huseyin, Larralde, Martin, McMurry, Julie A., Overton, James A., Peters, Bjoern, Pilgrim, Clare, Stefancsik, Ray, Robb, Sofia MC, Toro, Sabrina, Vasilevsky, Nicole A, Walls, Ramona, Mungall, Christopher J., Osumi-Sutherland, David
Similar to managing software packages, managing the ontology life cycle involves multiple complex workflows such as preparing releases, continuous quality control checking, and dependency management. To manage these processes, a diverse set of tools
Externí odkaz:
http://arxiv.org/abs/2207.02056
Autor:
Unni, Deepak R., Moxon, Sierra A. T., Bada, Michael, Brush, Matthew, Bruskiewich, Richard, Clemons, Paul, Dancik, Vlado, Dumontier, Michel, Fecho, Karamarie, Glusman, Gustavo, Hadlock, Jennifer J., Harris, Nomi L., Joshi, Arpita, Putman, Tim, Qin, Guangrong, Ramsey, Stephen A., Shefchek, Kent A., Solbrig, Harold, Soman, Karthik, Thessen, Anne T., Haendel, Melissa A., Bizon, Chris, Mungall, Christopher J., Consortium, the Biomedical Data Translator
Within clinical, biomedical, and translational science, an increasing number of projects are adopting graphs for knowledge representation. Graph-based data models elucidate the interconnectedness between core biomedical concepts, enable data structur
Externí odkaz:
http://arxiv.org/abs/2203.13906
Autor:
Matentzoglu, Nicolas, Balhoff, James P., Bello, Susan M., Bizon, Chris, Brush, Matthew, Callahan, Tiffany J., Chute, Christopher G, Duncan, William D., Evelo, Chris T., Gabriel, Davera, Graybeal, John, Gray, Alasdair, Gyori, Benjamin M., Haendel, Melissa, Harmse, Henriette, Harris, Nomi L., Harrow, Ian, Hegde, Harshad, Hoyt, Amelia L., Hoyt, Charles T., Jiao, Dazhi, Jiménez-Ruiz, Ernesto, Jupp, Simon, Kim, Hyeongsik, Koehler, Sebastian, Liener, Thomas, Long, Qinqin, Malone, James, McLaughlin, James A., McMurry, Julie A., Moxon, Sierra, Munoz-Torres, Monica C., Osumi-Sutherland, David, Overton, James A., Peters, Bjoern, Putman, Tim, Queralt-Rosinach, Núria, Shefchek, Kent, Solbrig, Harold, Thessen, Anne, Tudorache, Tania, Vasilevsky, Nicole, Wagner, Alex H., Mungall, Christopher J.
Despite progress in the development of standards for describing and exchanging scientific information, the lack of easy-to-use standards for mapping between different representations of the same or similar objects in different databases poses a major
Externí odkaz:
http://arxiv.org/abs/2112.07051
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