A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts

Autor: Lars Juhl Jensen, Søren Brunak, David Westergaard, Hans Henrik Stærfeldt, Christian Tønsberg

Publikováno v: Westergaard, D, Stærfeldt, H-H, Tønsberg, C, Jensen, L J & Brunak, S 2018, ' A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts ', PLoS Computational Biology, vol. 14, no. 2, e1005962 . https://doi.org/10.1371/journal.pcbi.1005962
PLoS Computational Biology
Westergaard, D, Stærfeldt, H H, Tønsberg, C, Jensen, L J & Brunak, S 2018, ' A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts ', P L o S Computational Biology (Online), vol. 14, no. 2, e1005962 . https://doi.org/10.1371/journal.pcbi.1005962
PLoS Computational Biology, Vol 14, Iss 2, p e1005962 (2018)

Across academia and industry, text mining has become a popular strategy for keeping up with the rapid growth of the scientific literature. Text mining of the scientific literature has mostly been carried out on collections of abstracts, due to their

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7126d9320d224ecb646d6db9c16ee462
https://curis.ku.dk/ws/files/210007970/journal.pcbi.1005962.pdf

A scored human protein-protein interaction network to catalyze genomic interpretation

Autor: Taibo Li, Olga Rigina, Johnathan Mercer, Grzegorz Slodkowicz, Hans Henrik Stærfeldt, Rasmus Wernersson, Kasper Lage, Heiko Horn, Kristoffer Rapacki, Thomas Skøt Jensen, Søren Brunak, Christopher T. Workman, Rasmus Borup Hansen

Human protein-protein interaction networks are critical to understanding cell biology and interpreting genetic and genomic data, but are challenging to produce in individual large-scale experiments. We describe a general computational framework that

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::219dffd23804a79e3ec742098e308d80

RNAmmer: consistent and rapid annotation of ribosomal RNA genes

Autor: David W. Ussery, Torbjørn Rognes, Karin Lagesen, Hans Henrik Stærfeldt, Peter Fischer Hallin, Einar Andreas Rødland

Publikováno v: Nucleic Acids Research

The publication of a complete genome sequence is usually accompanied by annotations of its genes. In contrast to protein coding genes, genes for ribosomal RNA (rRNA) are often poorly or inconsistently annotated. This makes comparative studies based o

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e9f0c7161656b4f141b727d7020c9193
http://europepmc.org/articles/PMC1888812

Prediction of human protein function according to Gene Ontology categories

Autor: Søren Brunak, Hans Henrik Stærfeldt, Lars Juhl Jensen, Ramneek Gupta

Publikováno v: University of Copenhagen

Motivation: The human genome project has led to the discovery of many human protein coding genes which were previously unknown. As a large fraction of these are functionally uncharacterized, it is of interest to develop methods for predicting their m

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::44c2ee65e3dcce192fe8736ebacf3bcc
https://doi.org/10.1093/bioinformatics/btg036

Proteome analysis of pod and seed development in the model legume Lotus japonicus

Autor: Peter Roepstorff, Brian Søgaard Laursen, Jens Stougaard, Carsten Friis, Nicolas Goffard, Satoshi Tabata, Shusei Sato, Andrea Lorentzen, Kasper Nielsen, Svend Dam, Astrid L Siegumfeldt, Hans Henrik Stærfeldt, Gitte Nautrup-Pedersen

Publikováno v: Nautrup-Pedersen, G, Dam, S S, Laursen, B S, Siegumfeldt, A L, Nielsen, K, Goffard, N, Stærfeldt, H H, Friis, C, Sato, S, Tabata, S, Lorentzen, A, Roepstorff, P & Stougaard, J 2010, ' Proteome analysis of pod and seed development in the model legume Lotus japonicus ', Journal of Proteome Research, vol. 9, no. 11, pp. 5715-26 . https://doi.org/10.1021/pr100511u
Nautrup-Pedersen, G, Dam, S, Laursen, B S, Siegumfeldt, A L, Nielsen, K, Goffard, N, Stærfeldt, H H, Friis, C, Sato, S, Tabata, S, Lorentzen, A, Roepstorff, P & Stougaard, J 2010, ' Proteome analysis of pod and seed development in the model legume Lotus japonicus ', Journal of Proteome Research, vol. 9, no. 11, pp. 5715-26 . https://doi.org/10.1021/pr100511u

Legume pods serve important functions during seed development and are themselves sources of food and feed. Compared to seeds, the metabolism and development of pods are not well-defined. The present characterization of pods from the model legume Lotu

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::460377dcd6c1aa0758d1544b5c511879
https://portal.findresearcher.sdu.dk/da/publications/59247315-7e80-4980-a4b2-35421d04a6a4