Zobrazeno 1 - 9
of 9
pro vyhledávání: '"Hannes Schabauer"'
Autor:
Heinz Stockinger, Hannes Schabauer, Alexandros Stamatakis, Christoph Pacher, Nicolas Salamin, Mario Valle, Marc Robinson-Rechavi
Publikováno v:
Bioinformatics
Bioinformatics, vol. 30, no. 8, pp. 1129-1137
Bioinformatics, vol. 30, no. 8, pp. 1129-1137
Motivation: The detection of positive selection is widely used to study gene and genome evolution, but its application remains limited by the high computational cost of existing implementations. We present a series of computational optimizations for
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6922cd71fa9409729e82b5626375acbe
Publikováno v:
ICCS
Methods for numerically solving generalized complex symmetric (non-Hermitian) eigenvalue problems (EVPs) A x = λ B x serially and in parallel are investigated. This research is motivated by two observations: Firstly, the conventional approach for so
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dcab53db94b01b2de74faf1ab9c36aab
Selectome update: quality control and computational improvements to a database of positive selection
Autor:
Marc Robinson-Rechavi, Heinz Stockinger, Sébastien Moretti, Briséïs Castella, Balazs Laurenczy, Mario Valle, Walid H. Gharib, Hannes Schabauer, Arnold Kuzniar, Romain A. Studer, Nicolas Salamin
Publikováno v:
Nucleic Acids Research
Nucleic Acids Research, vol. 42, no. 1, pp. D917-D921
Europe PubMed Central
Nucleic Acids Research, vol. 42, no. 1, pp. D917-D921
Europe PubMed Central
Selectome (http://selectome.unil.ch/) is a database of positive selection based on a branch site likelihood test. This model estimates the number of non synonymous substitutions (dN) and synonymous substitutions (dS) in order to evaluate the variatio
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::51493a62d64dfd5c06f04830c20e5fb3
https://pubmed.ncbi.nlm.nih.gov/24225318
https://pubmed.ncbi.nlm.nih.gov/24225318
Autor:
Hannes Schabauer, Alexandros Stamatakis, Mario Valle, Christoph Pacher, Nicolas Salamin, Ziheng Yang, Heinz Stockinger, Marc Robinson-Rechavi
Publikováno v:
HiCOMB (11th IEEE International Workshop on High Performance Computational Biology), pp. 700-708
IPDPS Workshops
IPDPS Workshops
CodeML (part of the PAML package) im- plements a maximum likelihood-based approach to de- tect positive selection on a specific branch of a given phylogenetic tree. While CodeML is widely used, it is very compute-intensive. We present SlimCodeML, an
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5779b9ce09995c2ddf752144cdaa442b
https://serval.unil.ch/resource/serval:BIB_5F7B13551FF8.P001/REF.pdf
https://serval.unil.ch/resource/serval:BIB_5F7B13551FF8.P001/REF.pdf
Autor:
Hannes Schabauer, Helmut Hlavacs, Joachim Zottl, Martin Petraschek, Oliver Jung, Thomas Hoeher, Wilfried Gansterer
Publikováno v:
JUCS-Journal of Universal Computer Science 14(5): 693-716
In this paper we present and discuss a new approach for securing multimedia communication, which is based on three innovations. The first innovation is the integration of a challenge-response scheme for enhancing the Diffie-Hellman based ZRTP protoco
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7c46c2faaf7a862c35c0876af25baf4a
https://zenodo.org/record/7000156
https://zenodo.org/record/7000156
Publikováno v:
Computational Science – ICCS 2008 ISBN: 9783540693833
ICCS (1)
ICCS (1)
We discuss a method for solving complex symmetric(non-Hermitian) eigenproblems Ax= i¾?Bxarising in an application from optoelectronics, where reduced accuracy requirements provide an opportunity for trading accuracy for performance. In this case, th
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::dcf76f63b480b7fc624c2672e0c1fafe
https://doi.org/10.1007/978-3-540-69384-0_99
https://doi.org/10.1007/978-3-540-69384-0_99
Publikováno v:
Computational Science – ICCS 2008 ISBN: 9783540693864
ICCS (2)
ICCS (2)
Complex financial instruments are a central concept for the survival of financial enterprises in liberalized markets. The need for fast pricing of more complex and exotic financial products led to the development of new algorithms, and to the paralle
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::70fe1c0efd5d708d8877f62b25ecf42f
https://doi.org/10.1007/978-3-540-69387-1_46
https://doi.org/10.1007/978-3-540-69387-1_46
Publikováno v:
Perceptual and motor skills. 104(3 Pt 1)
The Letters from the Heart effect described by Van den Bergh, Vrana, and Eelen in 1990 is the finding that, in a forced-choice affective evaluation paradigm, typists prefer nonmeaningful letter combinations typed with different fingers over those typ
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::aa707f1c9e002a7020685d9fdf26358e
https://pubmed.ncbi.nlm.nih.gov/17688137
https://pubmed.ncbi.nlm.nih.gov/17688137
Publikováno v:
PDCAT
This paper describes how to solve very large Traveling- Salesman Problems heuristically by the parallelization of self-organizing maps on cluster architectures. The used way of parallelizing is a sophisticated Structural Data Parallel approach based
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::158add1807016caff83d7198b555bae1
https://doi.org/10.1109/pdcat.2005.223
https://doi.org/10.1109/pdcat.2005.223