Zobrazeno 1 - 4
of 4
pro vyhledávání: '"Hannes Holste"'
Autor:
Joshua Shorenstein, Antonio Gonzalez, Mingxun Wang, Jeff DeReus, Daniel McDonald, Evan Bolyen, Stephanie B. Orchanian, Tomasz Kosciolek, J. Gregory Caporaso, Jai Ram Rideout, Matthew R. Dillon, Semar Petrus, Jon G. Sanders, Gail Ackermann, Austin D. Swafford, Rob Knight, Hannes Holste, Adam Robbins-Pianka, Pieter C. Dorrestein, Yoshiki Vázquez-Baeza, Stefan Janssen, Jose A. Navas-Molina, Colin J. Brislawn
Publikováno v:
Nature methods, vol 15, iss 10
Nature methods
Nature methods
Multi-omic insights into microbiome function and composition typically advance one study at a time. However, in order for relationships across studies to be fully understood, data must be aggregated into meta-analyses. This makes it possible to gener
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a008850da7123383da7b6085cffa2945
https://doi.org/10.1038/s41592-018-0141-9
https://doi.org/10.1038/s41592-018-0141-9
Autor:
Fernando Vargas, Matthew R. Dillon, Stephanie B. Orchanian, Mary L. Preuss, Daniel McDonald, Christian C. Abnet, J. Gregory Caporaso, Alexey V. Melnik, Claire Duvallet, Massoud Maher, Max von Hippel, Colin J. Brislawn, Jamie Morton, Kyle C. Weber, Patrick Rosenthal, Qiyun Zhu, Lauren J. McIver, Talima Pearson, Clarisse Marotz, Madeleine Ernst, Ruth E. Ley, Jiarong Guo, Tomasz Kosciolek, Jorden Kreps, Benjamin D. Kaehler, Deanna L. Gibson, Yilong Zhang, Kestrel Gorlick, Catherine A. Lozupone, Nicholas A. Bokulich, Jessica L. Metcalf, Daniel M. Durall, Paul Keim, Daniel Petras, Elmar Pruesse, Dan Knights, Emily K. Cope, Gavin M. Douglas, Sean M. Gibbons, Hannes Holste, Austin D. Swafford, Yong-Xin Liu, Sabah Ul-Hasan, Joslynn S. Lee, Benjamin J. Callahan, Mehrbod Estaki, Zhenjiang Zech Xu, Jordan E. Bisanz, Jennifer Fouquier, Lingjing Jiang, Justin J. J. van der Hooft, Ahmad Turan Naimey, Michael S. Robeson, Harriet Alexander, Jesse R. Zaneveld, Andrés Mauricio Caraballo-Rodríguez, Gavin A. Huttley, Antonio Gonzalez, Curtis Huttenhower, Anupriya Tripathi, Pauline Trinh, Mingxun Wang, Emily Vogtmann, Susan Holmes, Yunhu Wan, Rashmi Sinha, Irina Koester, William A. Walters, Yang Bai, Kyo Bin Kang, Luke R. Thompson, Christian F. Edwardson, Ricardo Silva, Pedro J. Torres, Gabriel A. Al-Ghalith, Stefan Janssen, Kyle Bittinger, Manimozhiyan Arumugam, Jonathan Warren, Alan K. Jarmusch, Lasse Buur Rasmussen, Rob Knight, Se Jin Song, Michael Shaffer, Sydney C. Morgan, Bryan D Martin, Peter J. Turnbaugh, C. Titus Brown, Jose A. Navas-Molina, Morgan G. I. Langille, Christopher R. Keefe, Benjamin Hillmann, Eric J. Alm, Evan Bolyen, Arron Shiffer, Louis-Félix Nothias, Christian Diener, Nicola Segata, Francesco Asnicar, Charles H. D. Williamson, Samuel L. Peoples, Amy D. Willis, Pieter C. Dorrestein, Adam R. Rivers, John Chase, Scott T. Kelley, Julia M. Gauglitz, Yoshiki Vázquez-Baeza, John R. Spear, Jai Ram Rideout, Asker Daniel Brejnrod, Erikka Loftfield
Publikováno v:
Nature Biotechnology 37 (2019) 8
Nature Biotechnology
Nature Biotechnology, 37(8), 852-857
PMC
Nature Biotechnology
Nature Biotechnology, 37(8), 852-857
PMC
QIIME 2 development was primarily funded by NSF Awards 1565100 to J.G.C. and 1565057 to R.K. Partial support was also provided by the following: grants NIH U54CA143925 (J.G.C. and T.P.) and U54MD012388 (J.G.C. and T.P.); grants from the Alfred P. Slo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f54f79979681348f38899868524602c4
https://research.wur.nl/en/publications/reproducible-interactive-scalable-and-extensible-microbiome-data-
https://research.wur.nl/en/publications/reproducible-interactive-scalable-and-extensible-microbiome-data-
Autor:
Daniel Petras, Mehrbod Estaki, Kyle C. Weber, Yilong Zhang, Emily Vogtmann, Kestrel Gorlick, Eric J. Alm, Benjamin J. Callahan, Evan Bolyen, Alexey V. Melnik, Yang Bai, Gabriel A. Al-Ghalith, Louis-Félix Nothias, Elmar Pruesse, Massoud Maher, Zhenjiang Zech Xu, Gavin M. Douglas, Dan Knights, Stefan Janssen, Christopher R. Keefe, Jonathan Warren, Yong-Xin Liu, Chase Hd Williamson, Manimozhiyan Arumugam, Ii Michael S Robeson, Justin J. J. van der Hooft, Kyle Bittinger, Alan K. Jarmusch, Antonio Gonzalez, Sydney C. Morgan, Paul Keim, Stephanie B. Orchanian, Jessica L. Metcalf, Bryan D Martin, Jordan E. Bisanz, Andrés Mauricio Caraballo-Rodríguez, Curtis Huttenhower, Peter J. Turnbaugh, Arron Shiffer, Nicola Segata, Samuel L. Peoples, Hannes Holste, Ruth E. Ley, Rashmi Sinha, Ahmad Turan Naimey, Talima Pearson, Jose A. Navas-Molina, Francesco Asnicar, Michael Shaffer, Daniel McDonald, Gavin A. Huttley, Kyo Bin Kang, Jorden Kreps, Luke R. Thompson, Daniel M. Durall, Benjamin D. Kaehler, Anupriya Tripathi, Max von Hippel, Catherine A. Lozupone, Joslynn S. Lee, John Chase, Nicholas A. Bokulich, Colin J. Brislawn, Pauline Trinh, C. Titus Brown, Harriet Alexander, Matthew R. Dillon, Clarisse Marotz, Ricardo Silva, Jamie Morton, Morgan G. I. Langille, Mary L. Preuss, Deanna L. Gibson, Pieter C. Dorrestein, J. Gregory Caporaso, Pedro J. Torres, Yunhu Wan, Christian F. Edwardson, William A. Walters, Claire Duvallet, Benjamin Hillmann, Erikka Loftfield, Mingxun Wang, Fernando Vargas, Patrick Rosenthal, Susan Holmes, Se Jin Song, Madeleine Ernst, Irina Koester, Sabah Ul-Hasan, Lasse Buur Rasmussen, Rob Knight, Christian C. Abnet, Lauren J. McIver, Austin D. Swafford, Emily K. Cope, Lingjing Jiang, Jiarong Guo, Tomasz Kosciolek, Scott T. Kelley, Julia M. Gauglitz, Yoshiki Vázquez-Baeza, Amy D. Willis, Adam R. Rivers, Jennifer Fouquier, Jesse R. Zaneveld, John R. Spear, Jai Ram Rideout, Asker Daniel Brejnrod
We present QIIME 2, an open-source microbiome data science platform accessible to users spanning the microbiome research ecosystem, from scientists and engineers to clinicians and policy makers. QIIME 2 provides new features that will drive the next
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6118a03972a3417c42d7ccba4e06fd9f
https://doi.org/10.7287/peerj.preprints.27295v1
https://doi.org/10.7287/peerj.preprints.27295v1
Autor:
Jamie Morton, Ruth E. Ley, Samuel L. Peoples, Dan Knights, Yong-Xin Liu, Gavin M. Douglas, Colin J. Brislawn, Fernando Vargas, Yunhu Wan, Daniel McDonald, Sean M. Gibbons, Daniel Petras, Amy D. Willis, Stephanie B. Orchanian, Rashmi Sinha, J. Gregory Caporaso, Gabriel A. Al-Ghalith, Claire Duvallet, Adam R. Rivers, Kyo Bin Kang, Lasse Buur Rasmussen, Pieter C. Dorrestein, Benjamin J. Callahan, Michael Shaffer, Rob Knight, Patrick Rosenthal, Madeleine Ernst, Matthew R. Dillon, Christian F. Edwardson, Qiyun Zhu, Yang Bai, Alexey V. Melnik, Daniel M. Durall, Christian C. Abnet, Lauren J. McIver, Julia M. Gauglitz, Jiarong Guo, Joslynn S. Lee, Charles H. D. Williamson, Tomasz Kosciolek, Massoud Maher, Emily Vogtmann, Mary L. Preuss, Kyle Bittinger, Alan K. Jarmusch, Mingxun Wang, Jose A. Navas-Molina, Susan Holmes, Michael S. Robeson, Manimozhiyan Arumugam, C. Titus Brown, Zhenjiang Zech Xu, Harriet Alexander, Nicola Segata, John Chase, Francesco Asnicar, Se Jin Song, Yoshiki Vázquez-Baeza, Sydney C. Morgan, Austin D. Swafford, Justin J. J. van der Hooft, Irina Koester, Stefan Janssen, Ahmad Turan Naimey, Antonio Gonzalez, Jessica L. Metcalf, Gavin A. Huttley, Elmar Pruesse, Scott T. Kelley, Jonathan Warren, Talima Pearson, Anupriya Tripathi, Luke R. Thompson, Sabah Ul-Hasan, Peter J. Turnbaugh, Emily K. Cope, Christopher R. Keefe, Hannes Holste, Catherine A. Lozupone, Ricardo Silva, Pedro J. Torres, Max von Hippel, Eric J. Alm, Evan Bolyen, Jordan E. Bisanz, Lingjing Jiang, Louis-Félix Nothias, Andrés Mauricio Caraballo-Rodríguez, William A. Walters, Curtis Huttenhower, Clarisse Marotz, Kyle C. Weber, Yilong Zhang, Kestrel Gorlick, Paul Keim, Asker Daniel Brejnrod, Deanna L. Gibson, Morgan G. I. Langille, Jennifer Fouquier, Jesse R. Zaneveld, Benjamin Hillmann, Mehrbod Estaki, John R. Spear, Jai Ram Rideout, Jorden Kreps, Benjamin D. Kaehler, Pauline Trinh, Nicholas A. Bokulich, Erikka Loftfield, Bryan D Martin, Arron Shiffer, Christian Diener
Publikováno v:
Nature Biotechnology (2019)
Nature Biotechnology
Nature Biotechnology
In the version of this article initially published, some reference citations were incorrect. The three references to Jupyter Notebooks should have cited Kluyver et al. instead of Gonzalez et al. The reference to Qiita should have cited Gonzalez et al
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ba38ad653e9de0b61f094bb9542ef7f9
https://doi.org/10.1038/s41587-019-0252-6
https://doi.org/10.1038/s41587-019-0252-6