Zobrazeno 1 - 10
of 41
pro vyhledávání: '"Hamid Mohamadi"'
Autor:
hamid mohamadi
Publikováno v:
Faṣlnāmah-i Pizhūhish-i Huqūq-i Kiyfarī, Vol 7, Iss 24, Pp 67-95 (2018)
The criminal responsibility will not be realized, unless under two circumstances: 1- having resolution power 2- having free will. Lacking one of these two circumstances is considered as a barrier for the criminal responsibility. Therefore, the resolu
Externí odkaz:
https://doaj.org/article/e0dd068702644afcb715d04ca428c5fc
Autor:
Shaun D. Jackman, Lauren Coombe, Justin Chu, Rene L. Warren, Benjamin P. Vandervalk, Sarah Yeo, Zhuyi Xue, Hamid Mohamadi, Joerg Bohlmann, Steven J.M. Jones, Inanc Birol
Publikováno v:
BMC Bioinformatics, Vol 19, Iss 1, Pp 1-10 (2018)
Abstract Background Genome sequencing yields the sequence of many short snippets of DNA (reads) from a genome. Genome assembly attempts to reconstruct the original genome from which these reads were derived. This task is difficult due to gaps and err
Externí odkaz:
https://doaj.org/article/dccb9dd54a6741eab57266cecd973b35
Autor:
Inanç Birol, Justin Chu, Hamid Mohamadi, Shaun D. Jackman, Karthika Raghavan, Benjamin P. Vandervalk, Anthony Raymond, René L. Warren
Publikováno v:
International Journal of Genomics, Vol 2015 (2015)
De novo assembly of the genome of a species is essential in the absence of a reference genome sequence. Many scalable assembly algorithms use the de Bruijn graph (DBG) paradigm to reconstruct genomes, where a table of subsequences of a certain length
Externí odkaz:
https://doaj.org/article/074da3bfe45a457d9a147da215297915
Autor:
Hamid Mohamadi, Benjamin P Vandervalk, Anthony Raymond, Shaun D Jackman, Justin Chu, Clay P Breshears, Inanc Birol
Publikováno v:
PLoS ONE, Vol 10, Iss 4, p e0126409 (2015)
One essential application in bioinformatics that is affected by the high-throughput sequencing data deluge is the sequence alignment problem, where nucleotide or amino acid sequences are queried against targets to find regions of close similarity. Wh
Externí odkaz:
https://doaj.org/article/3fb1e0c0dacb45e8966088a86155cf94
Autor:
Kristina K. Gagalova, René L. Warren, Lauren Coombe, Johnathan Wong, Ka Ming Nip, Macaire Man Saint Yuen, Justin G. A. Whitehill, Jose M. Celedon, Carol Ritland, Greg A. Taylor, Dean Cheng, Patrick Plettner, S. Austin Hammond, Hamid Mohamadi, Yongjun Zhao, Richard A. Moore, Andrew J. Mungall, Brian Boyle, Jérôme Laroche, Joan Cottrell, John J. Mackay, Manuel Lamothe, Sébastien Gérardi, Nathalie Isabel, Nathalie Pavy, Steven J. M. Jones, Joerg Bohlmann, Jean Bousquet, Inanc Birol
Publikováno v:
The Plant journal : for cell and molecular biologyREFERENCES. 111(5)
Spruces (Picea spp.) are coniferous trees widespread in boreal and mountainous forests of the northern hemisphere, with large economic significance and enormous contributions to global carbon sequestration. Spruces harbor very large genomes with high
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bc7f2332761765402197546306a30697
https://pubmed.ncbi.nlm.nih.gov/35789009
https://pubmed.ncbi.nlm.nih.gov/35789009
Publikováno v:
Bioinformatics (Oxford, England). 38(20)
MotivationSpaced seeds are robust alternatives to k-mers in analyzing nucleotide sequences with high base mismatch rates. Hashing is also crucial for efficiently storing abundant sequence data. Here, we introduce ntHash2, a fast algorithm for spaced
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6220f478477a78cf3b9f6a1ee0eab191
https://pubmed.ncbi.nlm.nih.gov/36000872
https://pubmed.ncbi.nlm.nih.gov/36000872
Autor:
Ka Ming Nip, Chen Yang, Justin Chu, René L. Warren, Readman Chiu, Inanc Birol, Hamid Mohamadi
Publikováno v:
Genome Res
Despite the rapid advance in single-cell RNA sequencing (scRNA-seq) technologies within the last decade, single-cell transcriptome analysis workflows have primarily used gene expression data while isoform sequence analysis at the single-cell level st
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e4d810cd4379d94e02e8df6db7019d64
https://doi.org/10.1101/gr.260174.119
https://doi.org/10.1101/gr.260174.119
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America
Significance The sustained growth in data throughput in DNA sequencing platforms surpasses the capacity growth in computing infrastructure. For many biological studies, faster alignment algorithms alleviated some of the computational burden, although
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::97ba1a5d19502daaf664c4169e360fc5
https://doi.org/10.1073/pnas.1903436117
https://doi.org/10.1073/pnas.1903436117
MotivationRepeat elements such as satellites, transposons, high number of gene copies, and segmental duplications are abundant in eukaryotic genomes. They often induce many local alignments, complicating sequence assembly and comparisons between geno
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::69e0feeed26fa8c903ae861b74528189
https://doi.org/10.1101/2020.11.02.365809
https://doi.org/10.1101/2020.11.02.365809
Autor:
Mashallah Salarpour, Amin Nikkhah, Mahmoud Ahmadpour Borazjani, Hamid Mohamadi, Valiollah Sarani, Monirahmad Rasoolizadeh
Publikováno v:
Sustainable Energy Technologies and Assessments. 49:101683
Agriculture is one of the major energy consumers in food supply chain. In this regard, exergy analysis can be used as a decision support tool toward evaluation of the energy flow of the production system, identification of energy hotspots, and develo
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::f1ad7f29b228fa6f6f67548161eb1978
https://doi.org/10.1016/j.seta.2021.101683
https://doi.org/10.1016/j.seta.2021.101683