High-quality draft genome sequence of Flavobacterium suncheonense GH29-5T (DSM 17707T) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5T

Autor: Tashkandy, N, Sabban, S, Fakieh, M, Meier-Kolthoff, JP, Huang, S, Tindall, BJ, Rohde, M, Baeshen, MN, Baeshen, NA, Lapidus, A, Copeland, A, Pillay, M, Reddy, TBK, Huntemann, M, Pati, A, Ivanova, N, Markowitz, V, Woyke, T, Göker, M, Klenk, HP, Kyrpides, NC, Hahnke, RL

Publikováno v: Tashkandy, N; Sabban, S; Fakieh, M; Meier-Kolthoff, JP; Huang, S; Tindall, BJ; et al.(2016). High-quality draft genome sequence of Flavobacterium suncheonense GH29-5T (DSM 17707T) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5T. Standards in Genomic Sciences, 11(1). doi: 10.1186/s40793-016-0159-5. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/7986g7rp

© 2016 The Author(s). Flavobacterium suncheonense is a member of the family Flavobacteriaceae in the phylum Bacteroidetes. Strain GH29-5T (DSM 17707T) was isolated from greenhouse soil in Suncheon, South Korea. F. suncheonense GH29-5T is part of the

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______325::b7a6649c5ae1a3c97706e2ee0e934dd3
http://www.escholarship.org/uc/item/7986g7rp

Structural color in the bacterial domain: The ecogenomics of a 2-dimensional optical phenotype.

Autor: Zomer A; Division of Infectious Diseases and Immunology, Utrecht University, Utrecht 3584 CL, the Netherlands., Ingham CJ; Hoekmine Besloten Vennootschap, Utrecht 3515 GJ, the Netherlands., von Meijenfeldt FAB; Theoretical Biology and Bioinformatics, Department of Biology, Science for Life, Utrecht University, Utrecht 3584 CH, the Netherlands.; Department of Marine Microbiology & Biogeochemistry, Royal Netherlands Institute for Sea Research, 't Horntje 1797 SZ, The Netherlands., Escobar Doncel Á; Hoekmine Besloten Vennootschap, Utrecht 3515 GJ, the Netherlands., van de Kerkhof GT; Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom., Hamidjaja R; Hoekmine Besloten Vennootschap, Utrecht 3515 GJ, the Netherlands., Schouten S; Hoekmine Besloten Vennootschap, Utrecht 3515 GJ, the Netherlands., Schertel L; Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom.; Department of Physics, University of Fribourg, Fribourg CH-1700, Switzerland., Müller KH; Department of Physiology, Development and Neuroscience, Cambridge Advanced Imaging Centre, University of Cambridge, Cambridge CB2 3DY, United Kingdom., Catón L; Hoekmine Besloten Vennootschap, Utrecht 3515 GJ, the Netherlands.; Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom., Hahnke RL; Leibniz Institute, German Collection of Microorganisms and Cell Cultures, Braunschweig 38124, Germany., Bolhuis H; Department of Marine Microbiology & Biogeochemistry, Royal Netherlands Institute for Sea Research, 't Horntje 1797 SZ, The Netherlands., Vignolini S; Yusuf Hamied Department of Chemistry, University of Cambridge, Cambridge CB2 1EW, United Kingdom.; Sustainable and Bio-inspired Materials, Max Planck Institute of Colloids and Interfaces, Potsdam 14476, Germany., Dutilh BE; Theoretical Biology and Bioinformatics, Department of Biology, Science for Life, Utrecht University, Utrecht 3584 CH, the Netherlands.; Institute of Biodiversity, Faculty of Biological Sciences, Cluster of Excellence Balance of the Microverse, Friedrich Schiller University Jena, Jena 07743, Germany.

Publikováno v: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2024 Jul 16; Vol. 121 (29), pp. e2309757121. Date of Electronic Publication: 2024 Jul 11.

Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908.

Autor: Robertson R; Santa Clara University, Santa Clara, California, USA., Conrad K; Santa Clara University, Santa Clara, California, USA., Ahuja B; Santa Clara University, Santa Clara, California, USA., Göker M; Leibniz Institute DSMZ, German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany., Hahnke RL; Leibniz Institute DSMZ, German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany., Spunde A; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA., Ivanova NN; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA., Seshadri R; DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA., Stephens C; Department of Biology, Santa Clara University, Santa Clara, California, USA.; Department of Public Health, Santa Clara University, Santa Clara, California, USA.

Publikováno v: Microbiology resource announcements [Microbiol Resour Announc] 2023 Oct 19; Vol. 12 (10), pp. e0054823. Date of Electronic Publication: 2023 Sep 15.

Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes.

Autor: Seshadri R; US Department of Energy Joint Genome Institute, Berkeley, CA, USA., Roux S; US Department of Energy Joint Genome Institute, Berkeley, CA, USA., Huber KJ; Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany., Wu D; US Department of Energy Joint Genome Institute, Berkeley, CA, USA., Yu S; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Udwary D; US Department of Energy Joint Genome Institute, Berkeley, CA, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Call L; US Department of Energy Joint Genome Institute, Berkeley, CA, USA., Nayfach S; US Department of Energy Joint Genome Institute, Berkeley, CA, USA., Hahnke RL; Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany., Pukall R; Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany., White JR; Resphera Biosciences, Baltimore, MD, USA., Varghese NJ; US Department of Energy Joint Genome Institute, Berkeley, CA, USA., Webb C; US Department of Energy Joint Genome Institute, Berkeley, CA, USA., Palaniappan K; US Department of Energy Joint Genome Institute, Berkeley, CA, USA., Reimer LC; Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany., Sardà J; Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany., Bertsch J; US Department of Energy Joint Genome Institute, Berkeley, CA, USA., Mukherjee S; US Department of Energy Joint Genome Institute, Berkeley, CA, USA., Reddy TBK; US Department of Energy Joint Genome Institute, Berkeley, CA, USA., Hajek PP; US Department of Energy Joint Genome Institute, Berkeley, CA, USA., Huntemann M; US Department of Energy Joint Genome Institute, Berkeley, CA, USA., Chen IA; US Department of Energy Joint Genome Institute, Berkeley, CA, USA., Spunde A; US Department of Energy Joint Genome Institute, Berkeley, CA, USA., Clum A; US Department of Energy Joint Genome Institute, Berkeley, CA, USA., Shapiro N; US Department of Energy Joint Genome Institute, Berkeley, CA, USA., Wu ZY; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Zhao Z; US Department of Energy Joint Genome Institute, Berkeley, CA, USA., Zhou Y; China General Microbiological Culture Collection Center, Beijing, China., Evtushenko L; Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences, All-Russian Collection of Microorganisms (VKM), Pushchino, Russia., Thijs S; Center for Environmental Sciences, Environmental Biology, Hasselt University, Diepenbeek, Belgium., Stevens V; Center for Environmental Sciences, Environmental Biology, Hasselt University, Diepenbeek, Belgium., Eloe-Fadrosh EA; US Department of Energy Joint Genome Institute, Berkeley, CA, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Mouncey NJ; US Department of Energy Joint Genome Institute, Berkeley, CA, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Yoshikuni Y; US Department of Energy Joint Genome Institute, Berkeley, CA, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.; Center for Advanced Bioenergy and Bioproducts Innovation, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.; Global Institution for Collaborative Research and Education, Hokkaido University, Hokkaido 060-8589, Japan., Whitman WB; Department of Microbiology, University of Georgia, Athens, GA, USA., Klenk HP; School of Biology, Newcastle University, Newcastle upon Tyne, UK., Woyke T; US Department of Energy Joint Genome Institute, Berkeley, CA, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Göker M; Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany., Kyrpides NC; US Department of Energy Joint Genome Institute, Berkeley, CA, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Ivanova NN; US Department of Energy Joint Genome Institute, Berkeley, CA, USA.; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.

Publikováno v: Cell genomics [Cell Genom] 2022 Nov 11; Vol. 2 (12), pp. 100213. Date of Electronic Publication: 2022 Nov 11 (Print Publication: 2022).

Natronosporangium hydrolyticum gen. nov., sp. nov., a haloalkaliphilic polyhydrolytic actinobacterium from a soda solonchak soil in Central Asia.

Autor: Sorokin DY; Winogradsky Institute of Microbiology, Research Centre of Biotechnology, Russian Academy of Sciences, Moscow, Russia; Department of Biotechnology, TU Delft, the Netherlands. Electronic address: soroc@inmi.ru., Elcheninov AG; Winogradsky Institute of Microbiology, Research Centre of Biotechnology, Russian Academy of Sciences, Moscow, Russia., Khijniak TV; Winogradsky Institute of Microbiology, Research Centre of Biotechnology, Russian Academy of Sciences, Moscow, Russia., Zaharycheva AP; Winogradsky Institute of Microbiology, Research Centre of Biotechnology, Russian Academy of Sciences, Moscow, Russia., Boueva OV; Skryabin Institute of Biochemistry and Physiology of Microorganisms, Pushchino Scientific Center for Biological Research, Russian Academy of Sciences, Puschino, Moscow Region, Russia., Ariskina EV; Skryabin Institute of Biochemistry and Physiology of Microorganisms, Pushchino Scientific Center for Biological Research, Russian Academy of Sciences, Puschino, Moscow Region, Russia., Bunk B; Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Germany., Spröer C; Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Germany., Evtushenko LI; Skryabin Institute of Biochemistry and Physiology of Microorganisms, Pushchino Scientific Center for Biological Research, Russian Academy of Sciences, Puschino, Moscow Region, Russia., Kublanov IV; Winogradsky Institute of Microbiology, Research Centre of Biotechnology, Russian Academy of Sciences, Moscow, Russia., Hahnke RL; Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Germany.

Publikováno v: Systematic and applied microbiology [Syst Appl Microbiol] 2022 May; Vol. 45 (3), pp. 126307. Date of Electronic Publication: 2022 Feb 24.