Identification of SARS-CoV-2 Variants of Concern Using Amplicon Next-Generation Sequencing

Autor: Abdelmajeed Nasereddin, Hadar Golan Berman, Dana G. Wolf, Esther Oiknine-Djian, Sheera Adar

Publikováno v: Microbiology Spectrum, Vol 10, Iss 4 (2022)

ABSTRACT COVID-19 is caused by SARS-CoV-2, several virulent variants of which have emerged since 2019. More than 529 million people have been infected, and at least 6 million have died. Our aim was to develop a fast, accurate, low-cost method for det

Externí odkaz: https://doaj.org/article/dc88ab56c9cf4720a97aff5f75634cd3

Outcome predictors and patient progress following delivery in pregnant and postpartum patients with severe COVID-19 pneumonitis in intensive care units in Israel (OB-COVICU): a nationwide cohort study

Autor: Elena Fatnic, Nikole Lee Blanco, Roman Cobiletchi, Esty Goldberger, Aharon Tevet, Ori Galante, Sigal Sviri, Tali Bdolah-Abram, Baruch M Batzofin, Reuven Pizov, Sharon Einav, Charles L Sprung, P Vernon van Heerden, Yehuda Ginosar, Tamer Abu Jreis, Susan Burrows, Ariel Berkowitz, Shimon Firman, Nicolas Galarza, Rawhi Hashem, Natasha Kuzmina, Stephane Ledot, Dana Wolf, Hadar Golan-Berman, Charles Weissman, Ronit Calderon-Margalit, Moshe Matan, Daniel J Jakobson, Arie Eden, Yael Lichter, Meital Zikry Deitch, Elena Kishinevsky, Shani Kaptzon, Liran Statlender, Chloe Mimouni, Yaron Bar-Lavie, Roy Ilan, Or Assouline, Larisa Yakobson, Dmitry Budman, Arie Soroksky

Publikováno v: The Lancet Respiratory Medicine. 11:520-529

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::0e123705eb1005d9b217a3f322455f2a
https://doi.org/10.1016/s2213-2600(22)00491-x

External Quality Assessment of SARS-CoV-2 Sequencing: an ESGMD-SSM Pilot Trial across 15 European Laboratories

Autor: Hege Vangstein Aamot, Helena M. B. Seth-Smith, Jordy P. M. Coolen, Claire Bertelli, Laurent Kaiser, Eva Bernhoff, Marcus Panning, Maryam Zaheri, Madlen Stange, Fanny Wegner, Stefan Neuenschwander, Tim Roloff, Jonas Fuchs, Stefan A. Boers, Karoline Leuzinger, Thomas Demuyser, Dana G. Wolf, Oliver Nolte, Charlotte Michel, Yannick Gerth, Tytti Vuorinen, Gilbert Greub, Michael Huber, Paul H. M. Savelkoul, Verena Kufner, Stefan Schmutz, Antti J. Hakanen, Samuel Cordey, Teemu Kallonen, Stephen L. Leib, Jozef Dingemans, Keith Harshman, Hans H. Hirsch, Pascal Bittel, Philippe Le Mercier, Willem J. G. Melchers, Alexandra Trkola, Sheera Adar, Marianne Gunell, Marit Andrea Klokkhammer Hetland, Alban Ramette, Eric C. J. Claas, Alfredo Mari, Brian van der Veer, Lorenzo Cerutti, Jacob Moran-Gilad, Marie Hallin, Ioannis Xenarios, Onya Opota, Hadar Golan Berman, Ricardo De Mendonça, Adrian Egli

Publikováno v: Journal of Clinical Microbiology, 60(1). AMER SOC MICROBIOLOGY
Journal of Clinical Microbiology, 60
Wegner, Fanny; Roloff, Tim; Huber, Michael; Cordey, Samuel; Ramette, Alban; Gerth, Yannick; Bertelli, Claire; Stange, Madlen; Seth-Smith, Helena M B; Mari, Alfredo; Leuzinger, Karoline; Cerutti, Lorenzo; Harshman, Keith; Xenarios, Ioannis; Le Mercier, Philippe; Bittel, Pascal; Neuenschwander, Stefan; Opota, Onya; Fuchs, Jonas; Panning, Marcus; ... (2022). External quality assessment of SARS-CoV-2-sequencing: An ESGMD-SSM pilot trial across 15 European laboratories. Journal of clinical microbiology, 60(1), e0169821. American Society for Microbiology 10.1128/JCM.01698-21
Journal of Clinical Microbiology, 60(1):e0169821. American Society for Microbiology
Journal of Clinical Microbiology, 60, 1

This first pilot trial on external quality assessment (EQA) of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) whole-genome sequencing, initiated by the European Society of Clinical Microbiology and Infectious Diseases (ESCMID) Study Gro

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a7fe99a85bca50c23fcaf7eaaa85ca69
https://hdl.handle.net/https://repository.ubn.ru.nl/handle/2066/248162

Genomic Characterization of Cisplatin Response Uncovers Priming of Cisplatin-Induced Genes in a Resistant Cell Line

Autor: Hiba Hassanain, Sheera Adar, Hadar Golan Berman, Pooja Chauhan, Shira Shalev, Avital Parnas

Publikováno v: International Journal of Molecular Sciences
Volume 22
Issue 11
International Journal of Molecular Sciences, Vol 22, Iss 5814, p 5814 (2021)

Cisplatin is a chemotherapy drug that kills cancer cells by damaging their DNA. In human cells, this damage is repaired primarily by nucleotide excision repair. While cisplatin is generally effective, many cancers exhibit initial or acquired resistan

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b0f29aa75e36cf363abb779b80ee01be

The sequential and cooperative action of CSB, CSA and UVSSA targets the TFIIH complex to DNA damage-stalled RNA polymerase II

Autor: Hadar Golan Berman, Sheera Adar, Johannes C. Walter, Katja Apelt, Martijn S. Luijsterburg, Alfred C.O. Vertegaal, Diana van den Heuvel, Yana van der Weegen, Elisheva E. Heilbrun, Tycho E. T. Mevissen, Román González-Prieto

Summary The response to DNA damage-stalled RNA polymerase II (RNAPIIo) involves the assembly of the transcription-coupled repair (TCR) complex on actively transcribed strands. The function of the TCR proteins CSB, CSA and UVSSA and the manner in whic

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::26c9eebff1dc4bbbb1e4ac52dd096070
https://doi.org/10.1101/707216