Zobrazeno 1 - 10
of 295
pro vyhledávání: '"H. Rangwala"'
Autor:
Sanjida H Rangwala, Dmitry V Rudnev, Victor V Ananiev, Dong-Ha Oh, Andrea Asztalos, Barrett Benica, Evgeny A Borodin, Nathan Bouk, Vladislav I Evgeniev, Vamsi K Kodali, Vadim Lotov, Eyal Mozes, Marina V Omelchenko, Sofya Savkina, Ekaterina Sukharnikov, Joël Virothaisakun, Terence D Murphy, Kim D Pruitt, Valerie A Schneider
Publikováno v:
PLoS Biology, Vol 22, Iss 5, p e3002405 (2024)
We report a new visualization tool for analysis of whole-genome assembly-assembly alignments, the Comparative Genome Viewer (CGV) (https://ncbi.nlm.nih.gov/genome/cgv/). CGV visualizes pairwise same-species and cross-species alignments provided by Na
Externí odkaz:
https://doaj.org/article/5f3ee861c1894e2e9be54c30e3c86d5c
Autor:
Joannella Morales, Shashikant Pujar, Jane E. Loveland, Alex Astashyn, Ruth Bennett, Andrew Berry, Eric Cox, Claire Davidson, Olga Ermolaeva, Catherine M. Farrell, Reham Fatima, Laurent Gil, Tamara Goldfarb, Jose M. Gonzalez, Diana Haddad, Matthew Hardy, Toby Hunt, John Jackson, Vinita S. Joardar, Michael Kay, Vamsi K. Kodali, Kelly M. McGarvey, Aoife McMahon, Jonathan M. Mudge, Daniel N. Murphy, Michael R. Murphy, Bhanu Rajput, Sanjida H. Rangwala, Lillian D. Riddick, Françoise Thibaud-Nissen, Glen Threadgold, Anjana R. Vatsan, Craig Wallin, David Webb, Paul Flicek, Ewan Birney, Kim D. Pruitt, Adam Frankish, Fiona Cunningham, Terence D. Murphy
Publikováno v:
Nature. 604:310-315
Comprehensive genome annotation is essential to understand the impact of clinically relevant variants. However, the absence of a standard for clinical reporting and browser display complicates the process of consistent interpretation and reporting. T
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d1dc0dd958a209783c4e67bd45d37986
https://doi.org/10.1038/s41586-022-04558-8
https://doi.org/10.1038/s41586-022-04558-8
Autor:
Catherine M. Farrell, Tamara Goldfarb, Sanjida H. Rangwala, Alexander Astashyn, Olga D. Ermolaeva, Vichet Hem, Kenneth S. Katz, Vamsi K. Kodali, Frank Ludwig, Craig L. Wallin, Kim D. Pruitt, Terence D. Murphy
Publikováno v:
Genome Research. 32:175-188
Eukaryotic genomes contain many nongenic elements that function in gene regulation, chromosome organization, recombination, repair, or replication, and mutation of those elements can affect genome function and cause disease. Although numerous epigeno
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a145ee4dadd7c0b1e640c7fe8e84ed2b
https://doi.org/10.1101/gr.275819.121
https://doi.org/10.1101/gr.275819.121
Autor:
Eric W Sayers, Evan E Bolton, J Rodney Brister, Kathi Canese, Jessica Chan, Donald C Comeau, Catherine M Farrell, Michael Feldgarden, Anna M Fine, Kathryn Funk, Eneida Hatcher, Sivakumar Kannan, Christopher Kelly, Sunghwan Kim, William Klimke, Melissa J Landrum, Stacy Lathrop, Zhiyong Lu, Thomas L Madden, Adriana Malheiro, Aron Marchler-Bauer, Terence D Murphy, Lon Phan, Shashikant Pujar, Sanjida H Rangwala, Valerie A Schneider, Tony Tse, Jiyao Wang, Jian Ye, Barton W Trawick, Kim D Pruitt, Stephen T Sherry
Publikováno v:
Nucleic Acids Res
The National Center for Biotechnology Information (NCBI) provides online information resources for biology, including the GenBank® nucleic acid sequence database and the PubMed® database of citations and abstracts published in life science journals
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a57078e0f67eb3b452a111fba83e1926
https://europepmc.org/articles/PMC9825438/
https://europepmc.org/articles/PMC9825438/
Autor:
Eric M. Weitz, Ravinder Pannu, Dmitry Rudnev, Vladislav Evgeniev, Victor Joukov, Sanjida H. Rangwala, Victor Ananiev, Anatoliy Kuznetsov, Valerie A. Schneider, Evgeny Borodin, Vadim Lotov, Andrea Asztalos, Andrew Shkeda
Publikováno v:
Genome Res
The National Center for Biotechnology Information (NCBI) is an archive providing free access to a wide range and large volume of biological sequence data and literature. Staff scientists at NCBI analyze user-submitted data in the archive, producing g
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::194d476f6fe81d008126b21791233f46
https://doi.org/10.1101/gr.266932.120
https://doi.org/10.1101/gr.266932.120
Presentation of poster 671B at TAGC 2020 Online. Files include a pptx file of the poster (TAGC 2020 Scroll SHR 042720.pptx)
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b71788bb5a778b216d1db7e228dd7c02
Autor:
Sanjida H Rangwala, Rangasamy Elumalai, Cheryl Vanier, Hakan Ozkan, David W Galbraith, Eric J Richards
Publikováno v:
PLoS Genetics, Vol 2, Iss 3, p e36 (2006)
Epigenetic variation is a potential source of genomic and phenotypic variation among different individuals in a population, and among different varieties within a species. We used a two-tiered approach to identify naturally occurring epigenetic allel
Externí odkaz:
https://doaj.org/article/573816f232214c3b818d648b3fe2ebb7
Autor:
Claire Davidson, Jonathan M. Mudge, Marie-Marthe Suner, Vamsi K. Kodali, Ruth L. Seal, Ruth Bennett, Shashikant Pujar, Fergal J. Martin, Carol J. Bult, M. Kay, Catherine M. Farrell, Nuala A. O'Leary, Craig Wallin, Carlos García Girón, Andrew Berry, If Barnes, Tamara Goldfarb, Adam Frankish, Kelly M. McGarvey, Bronwen Aken, Kim D. Pruitt, Mark Diekhans, Sophia Zhu, Terence Murphy, Michael R. Murphy, Elspeth A. Bruford, Monica S. McAndrews, John D. Jackson, Lillian D. Riddick, Bhanu Rajput, David Webb, Sanjida H. Rangwala, Eric Cox, Jose Manuel Gonzalez, Jane E. Loveland, Toby Hunt, Vinita Joardar
Publikováno v:
Nucleic Acids Research
The Consensus Coding Sequence (CCDS) project provides a dataset of protein-coding regions that are identically annotated on the human and mouse reference genome assembly in genome annotations produced independently by NCBI and the Ensembl group at EM
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::88944e49a83630689ec8bdd5176bc277
http://europepmc.org/articles/PMC5753299
http://europepmc.org/articles/PMC5753299
Autor:
Barbara Robbertse, Patrick Masterson, Jinna Choi, Sanjida H. Rangwala, Vyacheslav Brover, Olga Blinkova, Stacy Ciufo, Kim D. Pruitt, Conrad L. Schoch, Daniel H. Haft, Kelly M. McGarvey, Richard McVeigh, Raymond E. Tully, Bhanu Rajput, Alexander Astashyn, Vinita Joardar, Wratko Hlavina, Vamsi K. Kodali, Kathleen O'Neill, Danso Ako-adjei, Hanzhen Sun, Craig Wallin, Mathew W. Wright, Michael DiCuccio, Daniel Rausch, Catherine M. Farrell, Susan S. Storz, Avi Kimchi, Terence Murphy, Tripti Gupta, Eneida L. Hatcher, Donna Maglott, Shashikant Pujar, Brian Smith-White, David Webb, Nuala A. O'Leary, Wenjun Li, Michael R. Murphy, Igor Tolstoy, Françoise Thibaud-Nissen, Diana Haddad, Olga Ermolaeva, Azat Badretdin, Andrei Shkeda, Lillian D. Riddick, Tatiana Tatusova, Wendy Wu, Melissa J. Landrum, Vyacheslav Chetvernin, Tamara Goldfarb, Anjana R. Vatsan, Paul Kitts, J. Rodney Brister, Yiming Bao, Eric Cox
Publikováno v:
Nucleic Acids Research
The RefSeq project at the National Center for Biotechnology Information (NCBI) maintains and curates a publicly available database of annotated genomic, transcript, and protein sequence records (http://www.ncbi.nlm.nih.gov/refseq/). The RefSeq projec
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7fa63f34080e34e61b5a99d6a1c2b83d
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