Zobrazeno 1 - 10
of 41
pro vyhledávání: '"H. James Tripp"'
Publikováno v:
PLoS ONE, Vol 9, Iss 10, p e109738 (2014)
Synechococcus sp. PCC 7942 and Synechocystis sp. PCC 6803 are model cyanobacteria from which the metabolism and adaptive responses of other cyanobacteria are inferred. Using stranded and 5' enriched libraries, we measured the gene expression response
Externí odkaz:
https://doaj.org/article/b2145177d269488db6bc0dab30d22b9e
Publikováno v:
Frontiers in Microbiology, Vol 2 (2011)
Unicellular nitrogen-fixing cyanobacteria are important components of marine phytoplankton. Although non-nitrogen-fixing marine phytoplankton generally exhibit high gene sequence and genomic diversity, gene sequences of natural populations and isolat
Externí odkaz:
https://doaj.org/article/c43b6d3e5f044a72bcc8f1b603ba1330
Autor:
Nikos C. Kyrpides, Markus Englert, H. James Tripp, Edward M. Rubin, Corwin Miller, Takahito Mukai, Dieter Söll, Natalia Ivanova
Publikováno v:
Angewandte Chemie. 128:5423-5427
Selenocystein (Sec oder U) wird durch Neuzuordnung des Stopp-Codons UGA durch einen Sec-spezifischen Elongationsfaktor und eine charakteristische RNA-Struktur codiert. Um mogliche Codonvariationen zu finden, analysierten wir 6.4 Billionen Basenpaare
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ba056d13893c05056df947f0f31c6bf3
https://doi.org/10.1002/ange.201511657
https://doi.org/10.1002/ange.201511657
Autor:
Steven Carey, Amrita Pati, Paraskevi Nomikou, Stephanos P. Kilias, H. James Tripp, Georgios Kotoulas, Nikos C. Kyrpides, Natalia Ivanova, Paraskevi N. Polymenakou, Manolis Mandalakis, Rekha Seshadri, Christos A. Christakis, Antonions Magoulas, Patrick S. G. Chain, Anastasis Oulas, A. David Paez-Espino
Publikováno v:
Environmental Microbiology. 18:1122-1136
Hydrothermal vents represent a deep, hot, aphotic biosphere where chemosynthetic primary producers, fuelled by chemicals from Earth's subsurface, form the basis of life. In this study, we examined microbial mats from two distinct volcanic sites withi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f46e0fb96b646ce8bb0c2eaf6361837f
https://doi.org/10.1111/1462-2920.13095
https://doi.org/10.1111/1462-2920.13095
Autor:
H. James Tripp, Edward M. Rubin, Nikos C. Kyrpides, Tanja Woyke, Marcel Huntemann, Patrick Schwientek, Natalia Ivanova, Christian Rinke, Amrita Pati, Axel Visel
Publikováno v:
Science. 344:909-913
The canonical genetic code is assumed to be deeply conserved across all domains of life with very few exceptions. By scanning 5.6 trillion base pairs of metagenomic data for stop codon reassignment events, we detected recoding in a substantial fracti
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2a09b31f29669e600a25bbcc553ca2f9
https://doi.org/10.1126/science.1250691
https://doi.org/10.1126/science.1250691
Autor:
Mónica M. Collavino, Priscila A. Calderoli, O. Mario Aguilar, María Laura Vidoz, H. James Tripp, Mariano Humberto Donato, Jonathan P. Zehr, Ildiko E. Frank
Publikováno v:
Environmental Microbiology. 16:3211-3223
A dataset of 87 020 nifH reads and 16 782 unique nifH protein sequences obtained over 2 years from four locations across a gradient of agricultural soil types in Argentina were analysed to provide a detailed and comprehensive picture of the diversity
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::fd24e1842056863e6e83249b0049df14
https://doi.org/10.1111/1462-2920.12423
https://doi.org/10.1111/1462-2920.12423
Autor:
H. James Tripp
Publikováno v:
Journal of Microbiology. 51:147-153
The deeply branching clade of abundant, globally distributed aquatic α-Proteobacteria known as "SAR11", are adapted to nutrient-poor environments such as the surface waters of the open ocean. Unknown prior to 1990, uncultured until 2002, members of
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ed3bcb753dd76ae897ed4d3805ef31ed
https://doi.org/10.1007/s12275-013-2671-2
https://doi.org/10.1007/s12275-013-2671-2
Autor:
Natalia Ivanova, Dieter Söll, Takahito Mukai, Nikos C. Kyrpides, Markus Englert, H. James Tripp, Edward M. Rubin, Oscar Vargas-Rodriguez
Publikováno v:
Nucleic Acids Research
Mukai, T; Vargas-Rodriguez, O; Englert, M; Tripp, HJ; Ivanova, NN; Rubin, EM; et al.(2017). Transfer RNAs with novel cloverleaf structures. Nucleic Acids Research, 45(5), 2776-2785. doi: 10.1093/nar/gkw898. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/5mm9v4zg
Nucleic acids research, vol 45, iss 5
Mukai, T; Vargas-Rodriguez, O; Englert, M; Tripp, HJ; Ivanova, NN; Rubin, EM; et al.(2017). Transfer RNAs with novel cloverleaf structures. Nucleic Acids Research, 45(5), 2776-2785. doi: 10.1093/nar/gkw898. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/5mm9v4zg
Nucleic acids research, vol 45, iss 5
© The Author(s) 2016. We report the identification of novel tRNA species with 12-base pair amino-acid acceptor branches composed of longer acceptor stem and shorter Tstem. While canonical tRNAs have a 7/5 configuration of the branch, the novel tRNAs
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::47145c444245f5add00bb6fadf90aa18
https://pubmed.ncbi.nlm.nih.gov/28076288
https://pubmed.ncbi.nlm.nih.gov/28076288
Autor:
Takahito, Mukai, Markus, Englert, H James, Tripp, Corwin, Miller, Natalia N, Ivanova, Edward M, Rubin, Nikos C, Kyrpides, Dieter, Söll
Publikováno v:
Angewandte Chemie (Weinheim an der Bergstrasse, Germany). 128(17)
Selenocystein (Sec oder U) wird durch Neuzuordnung des Stopp-Codons UGA durch einen Sec-spezifischen Elongationsfaktor und eine charakteristische RNA-Struktur codiert. Um mögliche Codonvariationen zu finden, analysierten wir 6.4 Billionen Basenpaare
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::a3e308b4015978aee023deaf9159c81e
https://pubmed.ncbi.nlm.nih.gov/27440945
https://pubmed.ncbi.nlm.nih.gov/27440945
Autor:
Markus Englert, Corwin Miller, Takahito Mukai, Natalia Ivanova, Nikos C. Kyrpides, Dieter Söll, H. James Tripp, Edward M. Rubin
Publikováno v:
Mukai, T; Englert, M; Tripp, HJ; Miller, C; Ivanova, NN; Rubin, EM; et al.(2016). Facile Recoding of Selenocysteine in Nature. Angewandte Chemie-International Edition, 55(17), 5337-5341. doi: 10.1002/anie.201511657. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/8m84f4f1
Angewandte Chemie (International ed. in English), vol 55, iss 17
Angewandte Chemie (International ed. in English), vol 55, iss 17
© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim. Selenocysteine (Sec or U) is encoded by UGA, a stop codon reassigned by a Sec-specific elongation factor and a distinctive RNA structure. To discover possible code variations in extant organisms we
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f4bdcba3a8fdcc382d64a1f8f6739b9c
http://www.escholarship.org/uc/item/8m84f4f1
http://www.escholarship.org/uc/item/8m84f4f1
