eIF2A represses cell wall biogenesis gene expression in Saccharomyces cerevisiae.

Autor: Laura Meyer, Baptiste Courtin, Maïté Gomard, Abdelkader Namane, Emmanuelle Permal, Gwenael Badis, Alain Jacquier, Micheline Fromont-Racine

Publikováno v: PLoS ONE, Vol 18, Iss 11, p e0293228 (2023)

Translation initiation is a complex and highly regulated process that represents an important mechanism, controlling gene expression. eIF2A was proposed as an alternative initiation factor, however, its role and biological targets remain to be discov

Externí odkaz: https://doaj.org/article/d6ae11a88d104476b0f3b374692de1dc

Systematic determination of transcription factor DNA-binding specificities in yeast

Autor: Lourdes Peña-Castillo, Gwenael Badis

Publikováno v: Yeast Functional Genomics
Frédéric Devaux. Yeast Functional Genomics, 1361, Humana Press, pp.203-225, 2016, Methods in Molecular Biology, 978-1-4939-3079-1. ⟨10.1007/978-1-4939-3079-1_12⟩
Methods in Molecular Biology ISBN: 9781493930784

International audience; Understanding how genes are regulated, decoding their "regulome", is one of the main challenges of the post-genomic era. Here, we describe the in vitro method we used to associate cis-regulatory sites with cognate trans-regula

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e473370862e2d8402b8fd05098af684e
https://hal.archives-ouvertes.fr/hal-02356251

Systematic Determination of Transcription Factor DNA-Binding Specificities in Yeast

Autor: Lourdes, Peña-Castillo, Gwenael, Badis

Publikováno v: Methods in molecular biology (Clifton, N.J.). 1361

Understanding how genes are regulated, decoding their "regulome", is one of the main challenges of the post-genomic era. Here, we describe the in vitro method we used to associate cis-regulatory sites with cognate trans-regulators by characterizing t

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::db0519da6455d1f54b36f50786bb22e7
https://pubmed.ncbi.nlm.nih.gov/26483024

Yeast ribosomal protein L7 and its homologue Rlp7 are simultaneously present at distinct sites on pre-60S ribosomal particles

Autor: Gwenael Badis, Cosmin Saveanu, Antonio Díaz-Quintana, Alain Jacquier, Abdelkader Namane, Reyes Babiano, Micheline Fromont-Racine, Antonia Doyen, Jesús de la Cruz

Publikováno v: Nucleic Acids Research
Nucleic Acids Research, Oxford University Press, 2013, 41 (20), pp.9461--9470. ⟨10.1093/nar/gkt726⟩
Nucleic Acids Research, 2013, 41 (20), pp.9461--9470. ⟨10.1093/nar/gkt726⟩

International audience; Ribosome biogenesis requires \textgreater300 assembly factors in Saccharomyces cerevisiae. Ribosome assembly factors Imp3, Mrt4, Rlp7 and Rlp24 have sequence similarity to ribosomal proteins S9, P0, L7 and L24, suggesting that

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::df1caca7b45b2315dbb199d1c54f9a5f
https://hal-pasteur.archives-ouvertes.fr/pasteur-01404017/document

Genome-wide analysis of ets-family DNA-binding in vitro and in vivo

Autor: Mikko P. Turunen, Esko Ukkonen, Gong-Hong Wei, Martha L. Bulyk, Andrew R. Gehrke, Hendrik G. Stunnenberg, Michael F. Berger, Martin Bonke, Jussi Taipale, Arttu Jolma, Gwenael Badis, Markku Varjosalo, Teemu Kivioja, Jian Yan, Martin Enge, Timothy P. Hughes, Shaheynoor Talukder, Mikko Taipale, Kimmo Palin

Publikováno v: EMBO Journal, 29, 13, pp. 2147-2160
The EMBO Journal
EMBO Journal
EMBO Journal, EMBO Press, 2010, 29 (13), pp.2147-2160. ⟨10.1038/emboj.2010.106⟩
EMBO Journal, 29, 2147-2160

Members of the large ETS family of transcription factors (TFs) have highly similar DNA-binding domains (DBDs)—yet they have diverse functions and activities in physiology and oncogenesis. Some differences in DNA-binding preferences within this fami

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::03cbf94ed8dbc9f743c5a94a73e2e737
https://hdl.handle.net/2066/83390