A roadmap for the generation of benchmarking resources for antimicrobial resistance detection using next generation sequencing [version 2; peer review: 1 approved, 2 approved with reservations]

Autor: Alison E. Mather, Alice Carolyn McHardy, Ivo Gut, Gemma L. Kay, Kevin Vanneste, Arthur Pightling, John Rossen, Thierry Naas, Silke Peter, Henrik Westh, Alexandre Angers-Loustau, Etienne Ruppé, Robert Schlaberg, Marco Fabbri, Alessandro Cestaro, Maddalena Querci, Barbara Raffael, Mauro Petrillo, Paul Hammer, Lukas M. Weber, Jean-Yves Madec, Valentina Paracchini, Guy Van den Eede, Erik Alm, Derya Aytan-Aktug, Dafni Maria Kagkli, Teresa Coque, Kok-Gan Chan, Christoph Endrullat, Salvador Capella-Gutierrez, Catherine Carrillo

Publikováno v: F1000Research, Vol 10 (2022)

Next Generation Sequencing technologies significantly impact the field of Antimicrobial Resistance (AMR) detection and monitoring, with immediate uses in diagnosis and risk assessment. For this application and in general, considerable challenges rema

Externí odkaz: https://doaj.org/article/4a5a511e12b243b38c193c6ed9946a3f

Increase of SARS-CoV-2 RNA load in faecal samples prompts for rethinking of SARS-CoV-2 biology and COVID-19 epidemiology [version 3; peer review: 2 approved]

Autor: Mauro Petrillo, Carlo Brogna, Simone Cristoni, Maddalena Querci, Ornella Piazza, Guy Van den Eede

Publikováno v: F1000Research, Vol 10 (2021)

Background Scientific evidence for the involvement of human microbiota in the development of COVID-19 disease has been reported recently. SARS-CoV-2 RNA presence in human faecal samples and SARS-CoV-2 activity in faeces from COVID-19 patients have be

Externí odkaz: https://doaj.org/article/dff91477df57474f975714617b909730

Variant Analysis of SARS-CoV-2 Genomes from Belgian Military Personnel Engaged in Overseas Missions and Operations

Autor: Jean-Paul Pirnay, Philippe Selhorst, Samuel L. Hong, Christel Cochez, Barney Potter, Piet Maes, Mauro Petrillo, Gytis Dudas, Vincent Claes, Yolien Van der Beken, Gilbert Verbeken, Julie Degueldre, Simon Dellicour, Lize Cuypers, France T’Sas, Guy Van den Eede, Bruno Verhasselt, Wouter Weuts, Cedric Smets, Jan Mertens, Philippe Geeraerts, Kevin K. Ariën, Emmanuel André, Pierre Neirinckx, Patrick Soentjens, Guy Baele

Publikováno v: Viruses, Vol 13, Iss 7, p 1359 (2021)

More than a year after the first identification of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) as the causative agent of the 2019 coronavirus disease (COVID-19) in China, the emergence and spread of genomic variants of this virus thr

Externí odkaz: https://doaj.org/article/58be7be7925a41e38ee06bbc15307be0

Study of a SARS-CoV-2 Outbreak in a Belgian Military Education and Training Center in Maradi, Niger

Autor: Jean-Paul Pirnay, Philippe Selhorst, Christel Cochez, Mauro Petrillo, Vincent Claes, Yolien Van der Beken, Gilbert Verbeken, Julie Degueldre, France T’Sas, Guy Van den Eede, Wouter Weuts, Cedric Smets, Jan Mertens, Philippe Geeraerts, Kevin K. Ariën, Pierre Neirinckx, Patrick Soentjens

Publikováno v: Viruses, Vol 12, Iss 9, p 949 (2020)

Coronavirus disease 2019 (COVID-19) caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) compromises the ability of military forces to fulfill missions. At the beginning of May 2020, 22 out of 70 Belgian soldiers deployed to a milit

Externí odkaz: https://doaj.org/article/0806692944b74e2c98cd495e90a6bd01

A roadmap for the generation of benchmarking resources for antimicrobial resistance detection using next generation sequencing

Autor: Marco Fabbri, Valentina Paracchini, Henrik Westh, Mauro Petrillo, Paul Hammer, Barbara Raffael, Guy Van den Eede, Alexandre Angers-Loustau, Derya Aytan-Aktug, Alessandro Cestaro, Alice C. McHardy, Maddalena Querci, Christoph Endrullat, Catherine D. Carrillo, Silke Peter, Jean-Yves Madec, Erik Alm, John W. A. Rossen, Ivo Gut, Dafni-Maria Kagkli, Gemma L. Kay, Alison E. Mather, T. M. Coque, Kevin Vanneste, Thierry Naas, Kok-Gan Chan, Etienne Ruppé, Lukas M. Weber, Salvador Capella-Gutierrez, Robert Schlaberg, Arthur W. Pightling

Publikováno v: F1000Research, 10:80. F1000Research
Petrillo, M, Fabbri, M, Kagkli, D M, Querci, M, Van den Eede, G, Alm, E, Aytan, D, Capella-Gutierrez, S, Carrillo, C, Cestaro, A, Chan, K-G, Coque, T, Endrullat, C, Gut, I, Hammer, P, Kay, G L, Madec, J-Y, Mather, A E, McHardy, A C, Naas, T, Paracchini, V, Peter, S, Pightling, A, Raffael, B, Rossen, J, Ruppé, E, Schlaberg, R, Vanneste, K, Weber, L, Westh, H & Angers-Loustau, A 2021, ' A roadmap for the generation of benchmarking resources for antimicrobial resistance detection using next generation sequencing ', F1000Research, vol. 10, 80 . https://doi.org/10.12688/f1000research.39214.1

Next Generation Sequencing technologies significantly impact the field of Antimicrobial Resistance (AMR) detection and monitoring, with immediate uses in diagnosis and risk assessment. For this application and in general, considerable challenges rema

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::50c7dcf2caf2baa7d65a72af15dd1e82
https://research.rug.nl/en/publications/7fb855b6-5a63-4351-87fe-0fc0bc129525