The SEQC2 Epigenomics Quality Control (EpiQC) Study: comprehensive characterization of epigenetic methods, reproducibility, and quantification

Autor: Foox, J., Nordlund, J., Lalancette, C., Gong, T., Lacey, M., Lent, S., Langhorst, B.W., Ponnaluri, V.K.C., Williams, L., Padmamabhan, K., Cavalcante, R., Lundmark, A., Butler, D., Gurvitch, J., Greally, J.M., Suzuki, M., Menor, M., Nasu, M., Alonso, A., Sheridan, C., Scherer, A., Bruinsma, S., Golda, G., Muszynska, A., Labaj, P.P., Campbe, M.A., Wos, F., Raine, A., Liljedahl, U., Axelsson, T., Wang, C., Chen, Z., Yang, Z., Li, J., Yang, X., Wang, H., Melnick, A., Guo, S., Blume, A., Franke, V., Ibanez de Caceres, I., Rodriguez-Antolin, C., Rosas, R., Wade Davis, J., Ishii, J., Megherbi, D.B., Xiao, W., Liao, W., Xu, J., Hong, H., Ning, B., Tong, W., Akalin, A., Wang, Y., Mason, C.E.

Detection of DNA cytosine modifications such as 5-methylcytosine (5mC) and 5-hydroxy-methylcytosine (5hmC) is essential for understanding the epigenetic changes that guide development, cellular lineage specification, and disease. The wide variety of

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=mdc______med::0af55be1d35b8db56338da31808e6462
http://edoc.mdc-berlin.de/19760/1/19760oa.pdf

Discussion: “Behavior of Plywood Under Repeated Stresses” (Dietz, Albert G. H., and Grinsfelder, Henry, 1943, Trans. ASME, 65, pp. 187–191)

Autor: Gurvitch, J. E.

Publikováno v: Journal of Fluids Engineering; April 1943, Vol. 65 Issue: 3 p191-191, 1p

The SEQC2 epigenomics quality control (EpiQC) study.

Autor: Foox J; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, New York, USA.; The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medicine, New York, New York, USA., Nordlund J; Department of Medical Sciences and Science for Life Laboratory, Uppsala University, Uppsala, Sweden.; EATRIS ERIC- European Infrastructure for Translational Medicine, De Boelelaan 1118, 1081, HZ, Amsterdam, The Netherlands., Lalancette C; BRCF Epigenomics Core, University of Michigan Medicine, Ann Arbor, MI, 48109, USA., Gong T; Department of Quantitative Health Sciences, University of Hawaii John A. Burns School of Medicine, Honolulu, HI, 96813, USA., Lacey M; Tulane University, New Orleans, LA, 70118, USA., Lent S; AbbVie Genomics Research Center, 1 N. Waukegan Rd, North Chicago, IL, 60036, USA., Langhorst BW; New England Biolabs, Ipswich, MA, 01938, USA., Ponnaluri VKC; New England Biolabs, Ipswich, MA, 01938, USA., Williams L; New England Biolabs, Ipswich, MA, 01938, USA., Padmanabhan KR; BRCF Epigenomics Core, University of Michigan Medicine, Ann Arbor, MI, 48109, USA., Cavalcante R; BRCF Epigenomics Core, University of Michigan Medicine, Ann Arbor, MI, 48109, USA., Lundmark A; Department of Medical Sciences and Science for Life Laboratory, Uppsala University, Uppsala, Sweden.; EATRIS ERIC- European Infrastructure for Translational Medicine, De Boelelaan 1118, 1081, HZ, Amsterdam, The Netherlands., Butler D; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, New York, USA., Mozsary C; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, New York, USA., Gurvitch J; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, New York, USA., Greally JM; Albert Einstein College of Medicine, Bronx, NY, 10461, USA., Suzuki M; Albert Einstein College of Medicine, Bronx, NY, 10461, USA., Menor M; Department of Quantitative Health Sciences, University of Hawaii John A. Burns School of Medicine, Honolulu, HI, 96813, USA., Nasu M; Department of Quantitative Health Sciences, University of Hawaii John A. Burns School of Medicine, Honolulu, HI, 96813, USA., Alonso A; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, New York, USA., Sheridan C; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, New York, USA.; Division of Hematology/Oncology, Department of Medicine, Epigenomics Core Facility, Weill Cornell Medicine, New York, NY, USA., Scherer A; EATRIS ERIC- European Infrastructure for Translational Medicine, De Boelelaan 1118, 1081, HZ, Amsterdam, The Netherlands.; Institute for Molecular Medicine Finland (FIMM), University of Helsinki, Helsinki, Finland., Bruinsma S; Illumina, Inc., Madison, WI, 53705, USA., Golda G; Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Krakow, Poland., Muszynska A; Małopolska Centre of Biotechnology, Jagiellonian University, Krakow, Poland., Łabaj PP; Małopolska Centre of Biotechnology, Jagiellonian University, Krakow, Poland., Campbell MA; New England Biolabs, Ipswich, MA, 01938, USA., Wos F; New York Genome Center, New York, NY, 10013, USA., Raine A; Department of Medical Sciences and Science for Life Laboratory, Uppsala University, Uppsala, Sweden.; EATRIS ERIC- European Infrastructure for Translational Medicine, De Boelelaan 1118, 1081, HZ, Amsterdam, The Netherlands., Liljedahl U; Department of Medical Sciences and Science for Life Laboratory, Uppsala University, Uppsala, Sweden.; EATRIS ERIC- European Infrastructure for Translational Medicine, De Boelelaan 1118, 1081, HZ, Amsterdam, The Netherlands., Axelsson T; Department of Medical Sciences and Science for Life Laboratory, Uppsala University, Uppsala, Sweden.; EATRIS ERIC- European Infrastructure for Translational Medicine, De Boelelaan 1118, 1081, HZ, Amsterdam, The Netherlands., Wang C; Center for Genomics, School of Medicine, Loma Linda University, Loma Linda, CA, 92350, USA., Chen Z; Center for Genomics, School of Medicine, Loma Linda University, Loma Linda, CA, 92350, USA., Yang Z; Center for Genomics, School of Medicine, Loma Linda University, Loma Linda, CA, 92350, USA.; Department of Allergy and Clinical Immunology, State Key Laboratory of Respiratory Disease, Guangzhou Institute of Respiratory Health, the First Affiliated Hospital of Guangzhou Medical University, Guangzhou, Guangdong, China., Li J; Center for Genomics, School of Medicine, Loma Linda University, Loma Linda, CA, 92350, USA.; Department of Allergy and Clinical Immunology, State Key Laboratory of Respiratory Disease, Guangzhou Institute of Respiratory Health, the First Affiliated Hospital of Guangzhou Medical University, Guangzhou, Guangdong, China., Yang X; Department of Neurology, The Second Affiliated Hospital of Zhengzhou University, Zhengzhou, 450014, China., Wang H; Development of Medicine, the University of Chicago, Chicago, IL, 60637, USA., Melnick A; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, New York, USA., Guo S; Department of Neurology, the Second Affiliated Hospital of Zhengzhou University, Zhengzhou, 450014, China., Blume A; Bioinformatics and Omics Data Science Platform, Berlin Institute for Medical Systems Biology, Max Delbrueck Center for Molecular Medicine, Berlin, Germany., Franke V; Bioinformatics and Omics Data Science Platform, Berlin Institute for Medical Systems Biology, Max Delbrueck Center for Molecular Medicine, Berlin, Germany., Ibanez de Caceres I; EATRIS ERIC- European Infrastructure for Translational Medicine, De Boelelaan 1118, 1081, HZ, Amsterdam, The Netherlands.; Cancer Epigenetics Laboratory, INGEMM, IdiPAZ, Madrid, Spain., Rodriguez-Antolin C; EATRIS ERIC- European Infrastructure for Translational Medicine, De Boelelaan 1118, 1081, HZ, Amsterdam, The Netherlands.; Cancer Epigenetics Laboratory, INGEMM, IdiPAZ, Madrid, Spain., Rosas R; EATRIS ERIC- European Infrastructure for Translational Medicine, De Boelelaan 1118, 1081, HZ, Amsterdam, The Netherlands.; Cancer Epigenetics Laboratory, INGEMM, IdiPAZ, Madrid, Spain., Davis JW; AbbVie Genomics Research Center, 1 N. Waukegan Rd, North Chicago, IL, 60036, USA., Ishii J; New York Genome Center, New York, NY, 10013, USA., Megherbi DB; CMINDS Research Center, Francis College of Engineering, University of Massachusetts Lowell, Lowell, MA, 01854, USA., Xiao W; Center for Devices and Radiological Health, Food and Drug Administration, 10903 New Hampshire Ave, Silver Spring, MD, 20993, USA., Liao W; New York Genome Center, New York, NY, 10013, USA., Xu J; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, Food and Drug Administration, 3900 NCTR Road, Jefferson, AR, 72079, USA., Hong H; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, Food and Drug Administration, 3900 NCTR Road, Jefferson, AR, 72079, USA., Ning B; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, Food and Drug Administration, 3900 NCTR Road, Jefferson, AR, 72079, USA., Tong W; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, Food and Drug Administration, 3900 NCTR Road, Jefferson, AR, 72079, USA., Akalin A; Bioinformatics and Omics Data Science Platform, Berlin Institute for Medical Systems Biology, Max Delbrueck Center for Molecular Medicine, Berlin, Germany., Wang Y; Department of Neurology, the Second Affiliated Hospital of Zhengzhou University, Zhengzhou, 450014, China. wangyunliang81@163.com., Deng Y; Department of Quantitative Health Sciences, University of Hawaii John A. Burns School of Medicine, Honolulu, HI, 96813, USA. dengy@hawaii.edu., Mason CE; Department of Physiology and Biophysics, Weill Cornell Medicine, New York, New York, USA. chm2042@med.cornell.edu.; The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medicine, New York, New York, USA. chm2042@med.cornell.edu.; The Feil Family Brain and Mind Research Institute, New York, New York, USA. chm2042@med.cornell.edu.; The WorldQuant Initiative for Quantitative Prediction, Weill Cornell Medicine, New York, NY, USA. chm2042@med.cornell.edu.

Publikováno v: Genome biology [Genome Biol] 2021 Dec 06; Vol. 22 (1), pp. 332. Date of Electronic Publication: 2021 Dec 06.