Zobrazeno 1 - 10
of 97
pro vyhledávání: '"Guillem Rigaill"'
Autor:
Vincent Runge, Toby Dylan Hocking, Gaetano Romano, Fatemeh Afghah, Paul Fearnhead, Guillem Rigaill
Publikováno v:
Journal of Statistical Software, Vol 106, Pp 1-39 (2023)
In a world with data that change rapidly and abruptly, it is important to detect those changes accurately. In this paper we describe an R package implementing a generalized version of an algorithm recently proposed by Hocking, Rigaill, Fearnhead, and
Externí odkaz:
https://doaj.org/article/e67e85b988e8481c9b7a577d7dff285d
Publikováno v:
Journal of Statistical Software, Vol 101, Pp 1-31 (2022)
We describe a new algorithm and R package for peak detection in genomic data sets using constrained changepoint models. These detect changes from background to peak regions by imposing the constraint that the mean should alternately increase then dec
Externí odkaz:
https://doaj.org/article/01c9f7e6dfcd4f27836ce98edc88d868
Autor:
Gaëtan Maillot, Emmanuel Szadkowski, Anne Massire, Véronique Brunaud, Guillem Rigaill, Bernard Caromel, Joël Chadœuf, Alexandre Bachellez, Nasradin Touhami, Ingo Hein, Kurt Lamour, Sandrine Balzergue, Véronique Lefebvre
Publikováno v:
Frontiers in Plant Science, Vol 13 (2022)
Partial resistance in plants generally exerts a low selective pressure on pathogens, and thus ensuring their durability in agrosystems. However, little is known about the effect of partial resistance on the molecular mechanisms of pathogenicity, a kn
Externí odkaz:
https://doaj.org/article/1cb67f6153694782b7ed93edcc053114
Publikováno v:
BMC Bioinformatics, Vol 22, Iss 1, Pp 1-18 (2021)
Abstract Background Histone modification constitutes a basic mechanism for the genetic regulation of gene expression. In early 2000s, a powerful technique has emerged that couples chromatin immunoprecipitation with high-throughput sequencing (ChIP-se
Externí odkaz:
https://doaj.org/article/db1bccdf7a7840928ccebf2e210059ca
Publikováno v:
BMC Bioinformatics, Vol 21, Iss 1, Pp 1-12 (2020)
Abstract Background In unsupervised learning and clustering, data integration from different sources and types is a difficult question discussed in several research areas. For instance in omics analysis, dozen of clustering methods have been develope
Externí odkaz:
https://doaj.org/article/fd8bcdf013fd498fafd762b35eaa68d3
Publikováno v:
Algorithms for Molecular Biology, Vol 14, Iss 1, Pp 1-14 (2019)
Abstract Background Genomic data analyses such as Genome-Wide Association Studies (GWAS) or Hi-C studies are often faced with the problem of partitioning chromosomes into successive regions based on a similarity matrix of high-resolution, locus-level
Externí odkaz:
https://doaj.org/article/5ac97f32746145f3b3fc9026545c07fe
Autor:
Marc-André Lemay, Davoud Torkamaneh, Guillem Rigaill, Brian Boyle, Adrian O. Stec, Robert M. Stupar, François Belzile
Publikováno v:
BMC Genomics, Vol 20, Iss 1, Pp 1-16 (2019)
Abstract Background The effective use of mutant populations for reverse genetic screens relies on the population-wide characterization of the induced mutations. Genome- and population-wide characterization of the mutations found in fast neutron popul
Externí odkaz:
https://doaj.org/article/5fd9527f45e34dcba646d073651b19fd
Autor:
Mathilde Vinet, Samyuktha Suresh, Virginie Maire, Clarisse Monchecourt, Fariba Némati, Laetitia Lesage, Fabienne Pierre, Mengliang Ye, Auriane Lescure, Amélie Brisson, Didier Meseure, André Nicolas, Guillem Rigaill, Elisabetta Marangoni, Elaine Del Nery, Sergio Roman‐Roman, Thierry Dubois
Publikováno v:
Cancer Medicine, Vol 8, Iss 5, Pp 2414-2428 (2019)
Abstract TNBC is a highly heterogeneous and aggressive breast cancer subtype associated with high relapse rates, and for which no targeted therapy yet exists. Protein arginine methyltransferase 5 (PRMT5), an enzyme which catalyzes the methylation of
Externí odkaz:
https://doaj.org/article/e38d40999951432e94d1e8844dc31f54
Autor:
Marine Guilcher, Arnaud Liehrmann, Chloé Seyman, Thomas Blein, Guillem Rigaill, Benoit Castandet, Etienne Delannoy
Publikováno v:
International Journal of Molecular Sciences, Vol 22, Iss 20, p 11297 (2021)
Plastid gene expression involves many post-transcriptional maturation steps resulting in a complex transcriptome composed of multiple isoforms. Although short-read RNA-Seq has considerably improved our understanding of the molecular mechanisms contro
Externí odkaz:
https://doaj.org/article/f4a35f6865b448c1a6b06b24a9162bc2
Autor:
Jean-Tristan Brandenburg, Tristan Mary-Huard, Guillem Rigaill, Sarah J Hearne, Hélène Corti, Johann Joets, Clémentine Vitte, Alain Charcosset, Stéphane D Nicolas, Maud I Tenaillon
Publikováno v:
PLoS Genetics, Vol 13, Iss 3, p e1006666 (2017)
Through the local selection of landraces, humans have guided the adaptation of crops to a vast range of climatic and ecological conditions. This is particularly true of maize, which was domesticated in a restricted area of Mexico but now displays one
Externí odkaz:
https://doaj.org/article/2303a60624ad4700919bf747823c8365