Zobrazeno 1 - 10
of 45
pro vyhledávání: '"Greta Pangborn"'
Autor:
Greta Pangborn, Rebecca Rouleau, Alana Houlihan, Joanna A. Ellis-Monaghan, Margherita Maria Ferrari, Anna Cook, Nadrian C. Seeman
Publikováno v:
Journal of Mathematical Chemistry. 56:1365-1392
We describe the half-lap model, a mathematical framework that captures the geometric constraints of rigid tiles that are branched junction molecules used as building blocks for tile-based DNA self-assembly. The model captures not only the combinatori
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::b349217c939659239af3cf15a3c9953a
https://doi.org/10.1007/s10910-018-0858-9
https://doi.org/10.1007/s10910-018-0858-9
Autor:
Bharti Singh, Brianna Healy, Sam Blakeley, Ada Morse, Conor Disher, Greta Pangborn, Melissa C. Westland, Nadrian C. Seeman, Mary Falcigno, Joanna A. Ellis-Monaghan
Publikováno v:
Theoretical Computer Science. 671:69-78
Self-assembly using DNA origami methods requires determining a route for the scaffolding strand through the targeted structure. Here we provide strategies and software tools for determining optimal routes for reporter or scaffolding strands through g
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::0dde5310573383dbecaf1395136c6030
https://doi.org/10.1016/j.tcs.2016.10.007
https://doi.org/10.1016/j.tcs.2016.10.007
Autor:
Boris Aguilar, Olcay Akman, Robert Brijder, Timothy Comar, Carsten Conradi, Carina Curto, Robin Davies, Joanna Ellis-Monaghan, Stefan Forcey, Urmi Ghosh-Dastidar, Josselyn Gonzales, Gabriela Hamerlinck, Hendrik Jan Hoogeboom, Daniel Hrozencik, Andy Jenkins, Nataša Jonoska, John Jungck, Logan Keefe, Debra Knisley, Jeff Knisley, Matthew Macauley, Katherine Morrison, David Murrugarra, Greta Pangborn, Casian Pantea, Manda Riehl, Masahico Saito, Widodo Samyono, William Sands, Brandilyn Stigler, Alan Veliz-Cuba, Emilie Wiesner, Nora Youngs
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::84348b31a3b57dc7bef539202c13ca43
https://doi.org/10.1016/b978-0-12-814066-6.09996-7
https://doi.org/10.1016/b978-0-12-814066-6.09996-7
The chemical and physical properties of DNA that enable biological functions such as self-replication and encoding of genetic information also allow DNA to be used as a nanoscale building material. This emergent field of self-assembling DNA nanostruc
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::e5be791684826032bc6cea64b62ab533
https://doi.org/10.1016/b978-0-12-814066-6.00002-7
https://doi.org/10.1016/b978-0-12-814066-6.00002-7
Biological structures and phenomena often operate at multiple scales, and investigating important biological problems effectively often involves understanding these different scales and how they interact. However, the biological data often look very
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::edb56666828b9a0a8d79669b21b8452b
https://doi.org/10.1016/b978-0-12-814066-6.00001-5
https://doi.org/10.1016/b978-0-12-814066-6.00001-5
Autor:
Ada Morse, David Perry, Jessica Greene, Jo Ellis-Monaghan, Greta Pangborn, William Adkisson, Brenna Smith
Publikováno v:
Journal of Knot Theory and Its Ramifications. 29:2050041
Motivated by the problem of determining unknotted routes for the scaffolding strand in DNA origami self-assembly, we examine existence and knottedness of A-trails in graphs embedded on the torus. We show that any A-trail in a checkerboard-colorable t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::98fcecd033938066d9b53829ac6ec8b4
https://doi.org/10.1142/s0218216520500418
https://doi.org/10.1142/s0218216520500418
Publikováno v:
PRIMUS. 23:805-814
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::411129b00d720aec4ce7a3eb1ef9048e
https://doi.org/10.1080/10511970.2012.758680
https://doi.org/10.1080/10511970.2012.758680
Publikováno v:
Mathematical Modelling of Natural Phenomena. 6:96-107
A number of exciting new laboratory techniques have been developed using the Watson-Crick complementarity properties of DNA strands to achieve the self-assembly of graphical complexes. For all of these methods, an essential step in building the self-
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ec7a603d3d0bdfb287e5786f797868a8
https://doi.org/10.1051/mmnp/20116606
https://doi.org/10.1051/mmnp/20116606
Over the past twenty years, rectangle visibility graphs have generated considerable interest, in part due to their applicability to VLSI chip design. Here we study unit rectangle visibility graphs, with fixed dimension restrictions more closely model
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8fca0b3b1ddf834916d1655824015049
http://arxiv.org/abs/0710.2279
http://arxiv.org/abs/0710.2279
Publikováno v:
Discrete Mathematics. (13-14):2037-2053
In this survey, we give a friendly introduction from a graph theory perspective to the q-state Potts model, an important statistical mechanics tool for analyzing complex systems in which nearest neighbor interactions determine the aggregate behavior
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f2bbd92bb1f94143c433cbe33b5a1226