Zobrazeno 1 - 10
of 33
pro vyhledávání: '"Gregory T. Concepcion"'
Autor:
Zev N. Kronenberg, Arang Rhie, Sergey Koren, Gregory T. Concepcion, Paul Peluso, Katherine M. Munson, David Porubsky, Kristen Kuhn, Kathryn A. Mueller, Wai Yee Low, Stefan Hiendleder, Olivier Fedrigo, Ivan Liachko, Richard J. Hall, Adam M. Phillippy, Evan E. Eichler, John L. Williams, Timothy P. L. Smith, Erich D. Jarvis, Shawn T. Sullivan, Sarah B. Kingan
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-10 (2021)
Methods to produce haplotype-resolved genome assemblies often rely on access to family trios. The authors present FALCON-Phase, a tool that combines ultra-long range Hi-C chromatin interaction data with a long read de novo assembly to extend haplotyp
Externí odkaz:
https://doaj.org/article/36f8c0b7e92d40fdb0d367dee6cfc462
Autor:
llya Soifer, Nicole L. Fong, Nelda Yi, Andrea T. Ireland, Irene Lam, Matthew Sooknah, Jonathan S. Paw, Paul Peluso, Gregory T. Concepcion, David Rank, Alex R. Hastie, Vladimir Jojic, J. Graham Ruby, David Botstein, Margaret A. Roy
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 10, Iss 9, Pp 2911-2925 (2020)
In recent years, improved sequencing technology and computational tools have made de novo genome assembly more accessible. Many approaches, however, generate either an unphased or only partially resolved representation of a diploid genome, in which p
Externí odkaz:
https://doaj.org/article/fc204855ffab4b16a6e8a87c0af18497
Autor:
Robert J. Toonen, Kimberly R. Andrews, Iliana B. Baums, Christopher E. Bird, Gregory T. Concepcion, Toby S. Daly-Engel, Jeff A. Eble, Anuschka Faucci, Michelle R. Gaither, Matthew Iacchei, Jonathan B. Puritz, Jennifer K. Schultz, Derek J. Skillings, Molly A. Timmers, Brian W. Bowen
Publikováno v:
Journal of Marine Biology, Vol 2011 (2011)
Determining the geographic scale at which to apply ecosystem-based management (EBM) has proven to be an obstacle for many marine conservation programs. Generalizations based on geographic proximity, taxonomy, or life history characteristics provide l
Externí odkaz:
https://doaj.org/article/c9ce0a5fd7ec4f0d8e40f2b8f9397d14
Publikováno v:
Nat Methods
Haplotype-resolved de novo assembly is the ultimate solution to the study of sequence variations in a genome. However, existing algorithms either collapse heterozygous alleles into one consensus copy or fail to cleanly separate the haplotypes to prod
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6f267ca0b6397573d495b99f29bacc78
https://doi.org/10.1038/s41592-020-01056-5
https://doi.org/10.1038/s41592-020-01056-5
Autor:
Matthew Sooknah, Nicole L. Fong, Paul Peluso, Margaret Ann Roy, Gregory T. Concepcion, Nelda Yi, Andrea T. Ireland, Irene Lam, J. Graham Ruby, David R. Rank, Jonathan S Paw, Llya Soifer, Alex Hastie, Vladimir Jojic, David Botstein
Publikováno v:
G3: Genes, Genomes, Genetics, Vol 10, Iss 9, Pp 2911-2925 (2020)
In recent years, improved sequencing technology and computational tools have made de novo genome assembly more accessible. Many approaches, however, generate either an unphased or only partially resolved representation of a diploid genome, in which p
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6bcc84c527d85920a2996ccc5bbbe918
https://doi.org/10.1534/g3.119.400995
https://doi.org/10.1534/g3.119.400995
Autor:
Richard Hall, Gregory T. Concepcion, Paul Peluso, John L. Williams, Katherine M. Munson, Erich D. Jarvis, Stefan Hiendleder, Kristen L. Kuhn, Wai Yee Low, Evan E. Eichler, Sarah B. Kingan, Sergey Koren, Zev N. Kronenberg, Arang Rhie, Kathryn A. Mueller, Shawn Sullivan, David Porubsky, Ivan Liachko, Timothy P. L. Smith, Adam M. Phillippy, Olivier Fedrigo
Publikováno v:
Nature Communications
Nature Communications, Vol 12, Iss 1, Pp 1-10 (2021)
Nature Communications, Vol 12, Iss 1, Pp 1-10 (2021)
Haplotype-resolved genome assemblies are important for understanding how combinations of variants impact phenotypes. To date, these assemblies have been best created with complex protocols, such as cultured cells that contain a single-haplotype (hapl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::56bece2fb76123afb8b7ae462e7d4ca3
https://doi.org/10.1038/s41467-020-20536-y
https://doi.org/10.1038/s41467-020-20536-y
Autor:
Justin Elser, Gregory T. Concepcion, Daniel Moore, Paul Peluso, Brent A. Kronmiller, Pankaj Jaiswal, David A. Hendrix, Sarah B. Kingan, David R. Rank, Lillian K. Padgitt-Cobb, John A. Henning, Jackson Wells
Publikováno v:
The Plant Genome, Vol 14, Iss 1, Pp n/a-n/a (2021)
Hop (Humulus lupulus L. var Lupulus) is a diploid, dioecious plant with a history of cultivation spanning more than one thousand years. Hop cones are valued for their use in brewing and contain compounds of therapeutic interest including xanthohumol.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fcd269f8b5c7ceeece5070d3055f008f
https://doi.org/10.1002/tpg2.20072
https://doi.org/10.1002/tpg2.20072
Autor:
Biao Liu, Stephen H. McLaughlin, Heather Ebling, Alberto Riva, William B. Barbazuk, Kevin McKernan, Timothy T. Harkins, Zachary Eaton, Primo Baybayan, Mark Jordan, Sarah B. Kingan, Liam T. Kane, Lei Zhang, Yvonne Helbert, Gregory T. Concepcion
Cannabis is a diverse and polymorphic species. To better understand cannabinoid synthesis inheritance and its impact on pathogen resistance, we shotgun sequenced and assembled aCannabistrio (sibling pair and their offspring) utilizing long read singl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ad9c47d0aa51a922150e482415b32d64
https://doi.org/10.1101/2020.01.03.894428
https://doi.org/10.1101/2020.01.03.894428
Autor:
Lillian K. Padgitt-Cobb, Paul Peluso, Daniel Moore, David A. Hendrix, Pankaj Jaiswal, Sarah B. Kingan, John A. Henning, Justin Elser, Gregory T. Concepcion, Brent A. Kronmiller, Jackson Wells, David R. Rank
Hop (Humulus lupulus L. var Lupulus) is a diploid, dioecious plant with a history of cultivation spanning more than one thousand years. Hop cones are valued for their use in brewing, and around the world, hop has been used in traditional medicine to
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d9a358e212d7a3cd7d42d3dc7476a920
Autor:
Armin Töpfer, Justin M. Zook, Heng Li, Gregory T. Concepcion, Medhat Mahmoud, Paul Peluso, Andrew Carroll, Aaron M. Wenger, Nathan D. Olson, Alexander Kolesnikov, Michael Alonge, Arkarachai Fungtammasan, Adam M. Phillippy, Michael C. Schatz, David R. Rank, Jue Ruan, Sergey Koren, Fritz J. Sedlazeck, Pi-Chuan Chang, Yufeng Qian, Gene Myers, William J Rowell, Mark A. DePristo, Richard Hall, Tobias Marschall, Chen-Shan Chin, Michael W. Hunkapiller, Jana Ebler
Publikováno v:
Nature biotechnology
The DNA sequencing technologies in use today produce either highly accurate short reads or less-accurate long reads. We report the optimization of circular consensus sequencing (CCS) to improve the accuracy of single-molecule real-time (SMRT) sequenc
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bb91202d308e29488061125523e7bc0c