Zobrazeno 1 - 10
of 12
pro vyhledávání: '"Gregory A Moyerbrailean"'
Autor:
Gregory A Moyerbrailean, Cynthia A Kalita, Chris T Harvey, Xiaoquan Wen, Francesca Luca, Roger Pique-Regi
Publikováno v:
PLoS Genetics, Vol 12, Iss 2, p e1005875 (2016)
Large experimental efforts are characterizing the regulatory genome, yet we are still missing a systematic definition of functional and silent genetic variants in non-coding regions. Here, we integrated DNaseI footprinting data with sequence-based tr
Externí odkaz:
https://doaj.org/article/3f26b1e8dbfb43d88585cf94cd32c647
Autor:
Masanori Fujimoto, Gregory A Moyerbrailean, Sifat Noman, Jason P Gizicki, Michal L Ram, Phyllis A Green, Jeffrey L Ram
Publikováno v:
PLoS ONE, Vol 9, Iss 9, p e107534 (2014)
The impact of NaOH as a ballast water treatment (BWT) on microbial community diversity was assessed using the 16S rRNA gene based Ion Torrent sequencing with its new 400 base chemistry. Ballast water samples from a Great Lakes ship were collected fro
Externí odkaz:
https://doaj.org/article/a41abd91aade43c7a01d0e09c562a856
Autor:
Roger Pique-Regi, Francesca Luca, Christopher D. Brown, Xiaoquan Wen, Cynthia A Kalita, Gregory A Moyerbrailean
Publikováno v:
Bioinformatics. 34:787-794
Motivation The majority of the human genome is composed of non-coding regions containing regulatory elements such as enhancers, which are crucial for controlling gene expression. Many variants associated with complex traits are in these regions, and
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7b055fb0a99c195470dafb79c3c905d6
https://doi.org/10.1093/bioinformatics/btx598
https://doi.org/10.1093/bioinformatics/btx598
Autor:
Jun Sun, Ho-Sheng Lin, Ikuko Kato, Gregory A Moyerbrailean, Zora Djuric, Jeffrey L. Ram, Susan Land, Adrian A. Vasquez
Publikováno v:
Journal of the American College of Nutrition. 36:88-98
Despite many potential effects of the oral microbiome on oral and systemic health, scant information is available regarding the associations between diet and the oral microbiome.Oral rinse DNA samples from 182 participants in a population-based case-
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d795d5aa2157b56a193c8498ef53b6fa
https://doi.org/10.1080/07315724.2016.1185386
https://doi.org/10.1080/07315724.2016.1185386
Autor:
Roger Pique-Regi, Cynthia A Kalita, Gordon O Davis, Yoram Sorokin, Xiaoquan Wen, Francesca Luca, Daniel Kurtz, Chris T Harvey, Gregory A Moyerbrailean, Xiang Zhou, Allison L. Richards, Donovan Watza, Adnan Alazizi, Nancy J Hauff
Publikováno v:
Genome Research. 26:1627-1638
Gene-by-environment (GxE) interactions determine common disease risk factors and biomedically relevant complex traits. However, quantifying how the environment modulates genetic effects on human quantitative phenotypes presents unique challenges. Env
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2d5883ea98f9aafdbd88eed7b2771ca0
https://doi.org/10.1101/gr.209759.116
https://doi.org/10.1101/gr.209759.116
Autor:
Adrian A. Vasquez, Gregory A Moyerbrailean, Susan Land, Jun Sun, Jeffrey L. Ram, Ikuko Kato, Ho-Sheng Lin
Publikováno v:
Journal of Epidemiological Research. 2
Background: The equilibrium of oral microbiome may be altered by environmental factors, including cigarette smoking. Severalrecent studies also suggest that oral pathogens causing periodontal disease, such as Fusobacterium nucleatum , are involved in
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bec16f62225f0f531eb32d14ffa2c79b
https://doi.org/10.5430/jer.v2n2p92
https://doi.org/10.5430/jer.v2n2p92
Autor:
Chris T Harvey, Xiaoquan Wen, Donovan Watza, Francesca Luca, Roger Pique-Regi, Gregory A Moyerbrailean, Gordon O Davis
Publikováno v:
Scientific Reports
In recent years RNA-seq protocols have been developed to investigate a variety of biological problems by measuring the abundance of different RNAs. Many study designs involve performing expensive preliminary studies to screen or optimize experimental
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::447f61e9cc44f12c310acd3d6e91f804
Autor:
Roger Pique-Regi, Xiaoquan Wen, Gordon O Davis, Francesca Luca, Chris T Harvey, Gregory A Moyerbrailean
Motivation: Expression quantitative trait loci (eQTL) studies have discovered thousands of genetic variants that regulate gene expression, enabling a better understanding of the functional role of non-coding sequences. However, eQTL studies are costl
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::72a5dda201816580c5d16c53a9dcc388
https://europepmc.org/articles/PMC4393517/
https://europepmc.org/articles/PMC4393517/
Autor:
Xiaoquan Wen, Gregory A Moyerbrailean, Gordon O Davis, Chris T Harvey, Francesca Luca, Roger Pique-Regi
Expression quantitative trait loci (eQTL) studies have discovered thousands of genetic variants that regulate gene expression, enabling a better understanding of the functional role of non-coding sequences. However, eQTL studies are costly, requiring
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cb16cdd8b1b9d799a99a71d5184917b1
Autor:
Gregory A Moyerbrailean, Xiaoquan Wen, Francesca Luca, Chris T Harvey, Cynthia A Kalita, Roger Pique-Regi
Ongoing large experimental characterization is crucial to determine all regulatory sequences, yet we do not know which genetic variants in those regions are non-silent. Here, we present a novel analysis integrating sequence and DNase I footprinting d
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::82bb713e5a522efb8170cc9abfd54433