Brain Modeling ToolKit: An open source software suite for multiscale modeling of brain circuits.

Autor: Dai K; Allen Institute, Seattle, Washington, United States of America., Gratiy SL; Allen Institute, Seattle, Washington, United States of America., Billeh YN; Allen Institute, Seattle, Washington, United States of America., Xu R; Allen Institute, Seattle, Washington, United States of America., Cai B; Allen Institute, Seattle, Washington, United States of America., Cain N; Allen Institute, Seattle, Washington, United States of America., Rimehaug AE; Norwegian University of Life Sciences & University of Oslo, Oslo, Norway., Stasik AJ; Norwegian University of Life Sciences & University of Oslo, Oslo, Norway., Einevoll GT; Norwegian University of Life Sciences & University of Oslo, Oslo, Norway., Mihalas S; Allen Institute, Seattle, Washington, United States of America., Koch C; Allen Institute, Seattle, Washington, United States of America., Arkhipov A; Allen Institute, Seattle, Washington, United States of America.

Publikováno v: PLoS computational biology [PLoS Comput Biol] 2020 Nov 30; Vol. 16 (11), pp. e1008386. Date of Electronic Publication: 2020 Nov 30 (Print Publication: 2020).

The SONATA data format for efficient description of large-scale network models.

Autor: Dai K; Allen Institute for Brain Science, Seattle, Washington, United States of America., Hernando J; Blue Brain Project, École Polytechnique Fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland., Billeh YN; Allen Institute for Brain Science, Seattle, Washington, United States of America., Gratiy SL; Allen Institute for Brain Science, Seattle, Washington, United States of America., Planas J; Blue Brain Project, École Polytechnique Fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland., Davison AP; Paris-Saclay Institute of Neuroscience UMR, Centre National de la Recherche Scientifique/Université Paris-Saclay, Gif-sur-Yvette, France., Dura-Bernal S; State University of New York Downstate Medical Center, Brooklyn, New York, United States of America.; Nathan Kline Institute for Psychiatric Research, Orangeburg, New York, United States of America., Gleeson P; Department of Neuroscience, Physiology and Pharmacology, University College London, London, United Kingdom., Devresse A; Blue Brain Project, École Polytechnique Fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland., Dichter BK; Department of Neurosurgery, Stanford University, Stanford, California, United States of America.; Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America., Gevaert M; Blue Brain Project, École Polytechnique Fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland., King JG; Blue Brain Project, École Polytechnique Fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland., Van Geit WAH; Blue Brain Project, École Polytechnique Fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland., Povolotsky AV; Blue Brain Project, École Polytechnique Fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland., Muller E; Blue Brain Project, École Polytechnique Fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland., Courcol JD; Blue Brain Project, École Polytechnique Fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland., Arkhipov A; Allen Institute for Brain Science, Seattle, Washington, United States of America.

Publikováno v: PLoS computational biology [PLoS Comput Biol] 2020 Feb 24; Vol. 16 (2), pp. e1007696. Date of Electronic Publication: 2020 Feb 24 (Print Publication: 2020).

Fully integrated silicon probes for high-density recording of neural activity.

Autor: Jun JJ; HHMI Janelia Research Campus, 19700 Helix Drive, Ashburn, Virginia 20147, USA., Steinmetz NA; UCL Institute of Neurology, University College London, London WC1N 3BG, UK.; Department of Neuroscience, Physiology and Pharmacology, University College London, London WC1E 6DE, UK.; UCL Institute of Ophthalmology, University College London, London EC1V 9EL, UK., Siegle JH; Allen Institute for Brain Science, 615 Westlake Avenue North, Seattle, Washington 98109, USA., Denman DJ; Allen Institute for Brain Science, 615 Westlake Avenue North, Seattle, Washington 98109, USA., Bauza M; Department of Cell and Developmental Biology, University College London, London WC1E 6BT, UK.; Sainsbury Wellcome Centre, University College London, London W1T 4JG, UK., Barbarits B; HHMI Janelia Research Campus, 19700 Helix Drive, Ashburn, Virginia 20147, USA., Lee AK; HHMI Janelia Research Campus, 19700 Helix Drive, Ashburn, Virginia 20147, USA., Anastassiou CA; Allen Institute for Brain Science, 615 Westlake Avenue North, Seattle, Washington 98109, USA.; Department of Neurology, University of British Columbia, Vancouver, British Columbia V6T 2B5, Canada., Andrei A; imec, Kapeldreef 75, 3001 Heverlee, Leuven, Belgium., Aydın Ç; Neuro-Electronics Research Flanders, Kapeldreef 75, 3001 Leuven, Belgium.; KU Leuven, Department of Biology, Naamsestraat 59, 3000 Leuven, Belgium., Barbic M; HHMI Janelia Research Campus, 19700 Helix Drive, Ashburn, Virginia 20147, USA., Blanche TJ; Allen Institute for Brain Science, 615 Westlake Avenue North, Seattle, Washington 98109, USA.; White Matter LLC, 999 3rd Avenue 700, 98104 Seattle, USA., Bonin V; imec, Kapeldreef 75, 3001 Heverlee, Leuven, Belgium.; Neuro-Electronics Research Flanders, Kapeldreef 75, 3001 Leuven, Belgium.; KU Leuven, Department of Biology, Naamsestraat 59, 3000 Leuven, Belgium.; VIB, 3001 Leuven, Belgium., Couto J; Neuro-Electronics Research Flanders, Kapeldreef 75, 3001 Leuven, Belgium.; KU Leuven, Department of Biology, Naamsestraat 59, 3000 Leuven, Belgium., Dutta B; imec, Kapeldreef 75, 3001 Heverlee, Leuven, Belgium., Gratiy SL; Allen Institute for Brain Science, 615 Westlake Avenue North, Seattle, Washington 98109, USA., Gutnisky DA; HHMI Janelia Research Campus, 19700 Helix Drive, Ashburn, Virginia 20147, USA., Häusser M; Department of Neuroscience, Physiology and Pharmacology, University College London, London WC1E 6DE, UK.; Wolfson Institute for Biomedical Research, University College London, Gower Street, London WC1E 6BT, UK., Karsh B; HHMI Janelia Research Campus, 19700 Helix Drive, Ashburn, Virginia 20147, USA., Ledochowitsch P; Allen Institute for Brain Science, 615 Westlake Avenue North, Seattle, Washington 98109, USA., Lopez CM; imec, Kapeldreef 75, 3001 Heverlee, Leuven, Belgium., Mitelut C; Allen Institute for Brain Science, 615 Westlake Avenue North, Seattle, Washington 98109, USA.; Department of Neurology, University of British Columbia, Vancouver, British Columbia V6T 2B5, Canada., Musa S; imec, Kapeldreef 75, 3001 Heverlee, Leuven, Belgium., Okun M; UCL Institute of Neurology, University College London, London WC1N 3BG, UK.; Department of Neuroscience, Physiology and Pharmacology, University College London, London WC1E 6DE, UK.; Centre for Systems Neuroscience, University of Leicester, Leicester LE1 7QR, UK., Pachitariu M; UCL Institute of Neurology, University College London, London WC1N 3BG, UK.; Department of Neuroscience, Physiology and Pharmacology, University College London, London WC1E 6DE, UK., Putzeys J; imec, Kapeldreef 75, 3001 Heverlee, Leuven, Belgium., Rich PD; HHMI Janelia Research Campus, 19700 Helix Drive, Ashburn, Virginia 20147, USA., Rossant C; UCL Institute of Neurology, University College London, London WC1N 3BG, UK.; Department of Neuroscience, Physiology and Pharmacology, University College London, London WC1E 6DE, UK., Sun WL; HHMI Janelia Research Campus, 19700 Helix Drive, Ashburn, Virginia 20147, USA., Svoboda K; HHMI Janelia Research Campus, 19700 Helix Drive, Ashburn, Virginia 20147, USA., Carandini M; UCL Institute of Ophthalmology, University College London, London EC1V 9EL, UK., Harris KD; UCL Institute of Neurology, University College London, London WC1N 3BG, UK.; Department of Neuroscience, Physiology and Pharmacology, University College London, London WC1E 6DE, UK., Koch C; Allen Institute for Brain Science, 615 Westlake Avenue North, Seattle, Washington 98109, USA., O'Keefe J; Department of Cell and Developmental Biology, University College London, London WC1E 6BT, UK.; Sainsbury Wellcome Centre, University College London, London W1T 4JG, UK., Harris TD; HHMI Janelia Research Campus, 19700 Helix Drive, Ashburn, Virginia 20147, USA.

Publikováno v: Nature [Nature] 2017 Nov 08; Vol. 551 (7679), pp. 232-236.

In vivo stimulus-induced vasodilation occurs without IP3 receptor activation and may precede astrocytic calcium increase.

Autor: Nizar K; Neurosciences Graduate Program, University of California, San Diego, La Jolla, California 92093, USA., Uhlirova H, Tian P, Saisan PA, Cheng Q, Reznichenko L, Weldy KL, Steed TC, Sridhar VB, MacDonald CL, Cui J, Gratiy SL, Sakadzić S, Boas DA, Beka TI, Einevoll GT, Chen J, Masliah E, Dale AM, Silva GA, Devor A

Publikováno v: The Journal of neuroscience : the official journal of the Society for Neuroscience [J Neurosci] 2013 May 08; Vol. 33 (19), pp. 8411-22.

In vivo alterations in calcium buffering capacity in transgenic mouse model of synucleinopathy.

Autor: Reznichenko L; Department of Neurosciences, University of California, San Diego, La Jolla, California 92093, USA. lydia.reznichenko@gmail.com, Cheng Q, Nizar K, Gratiy SL, Saisan PA, Rockenstein EM, González T, Patrick C, Spencer B, Desplats P, Dale AM, Devor A, Masliah E

Publikováno v: The Journal of neuroscience : the official journal of the Society for Neuroscience [J Neurosci] 2012 Jul 18; Vol. 32 (29), pp. 9992-8.