The impact of oxygen on the transcriptome of recombinant S. cerevisiae and P. pastoris - a comparative analysis

Autor: Porro Danilo, Dragosits Martin, Frascotti Gianni, Graf Alexandra B, Dato Laura, Baumann Kristin, Mattanovich Diethard, Ferrer Pau, Branduardi Paola

Publikováno v: BMC Genomics, Vol 12, Iss 1, p 218 (2011)

Abstract Background Saccharomyces cerevisiae and Pichia pastoris are two of the most relevant microbial eukaryotic platforms for the production of recombinant proteins. Their known genome sequences enabled several transcriptomic profiling studies und

Externí odkaz: https://doaj.org/article/f5907add5cc948a3be78f663b2b7ca83

Customizing amino acid metabolism of Pichia pastoris for recombinant protein production.

Autor: Rußmayer, Hannes, Buchetics, Markus, Mattanovich, Matthias, Neubauer, Stefan, Steiger, Matthias, Graf, Alexandra B., Koellensperger, Gunda, Hann, Stephan, Sauer, Michael, Gasser, Brigitte, Mattanovich, Diethard

Publikováno v: Biotechnology Journal; Dec2023, Vol. 18 Issue 12, p1-12, 12p

BMC Biolinformatics / Tamock: simulation of habitat-specific benchmark data in metagenomics

Autor: Gerner, Samuel M., Graf, Alexandra B., Rattei, Thomas

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_____10650::84b3c35f758d9422e35196fa36a54f59
https://pub.fh-campuswien.ac.at/doi/10.1186/s12859-021-04154-z

A global metagenomic map of urban microbiomes and antimicrobial resistance

Autor: Danko, David, Bezdan, Daniela, Afshin, Evan E., Ahsanuddin, Sofia, Bhattacharya, Chandrima, Butler, Daniel J., Chng, Kern Rei, Donnellan, Daisy, Hecht, Jochen, Jackson, Katelyn, Kuchin, Katerina, Karasikov, Mikhail, Lyons, Abigail, Mak, Lauren, Meleshko, Dmitry, Mustafa, Harun, Mutai, Beth, Neches, Russell Y., Ng, Amanda, Nikolayeva, Olga, Nikolayeva, Tatyana, Png, Eileen, Ryon, Krista A., Sanchez, Jorge L., Shaaban, Heba, Sierra, Maria A., Thomas, Dominique, Young, Ben, Abudayyeh, Omar O., Alicea, Josue, Bhattacharyya, Malay, Blekhman, Ran, Castro-Nallar, Eduardo, Canas, Ana M., Chatziefthimiou, Aspassia D., Crawford, Robert W., De Filippis, Francesca, Deng, Youping, Desnues, Christelle, Dias-Neto, Emmanuel, Dybwad, Marius, Elhaik, Eran, Ercolini, Danilo, Frolova, Alina, Gankin, Dennis, Gootenberg, Jonathan S., Graf, Alexandra B., Green, David C., Hajirasouliha, Iman, Hastings, Jaden J. A., Hernandez, Mark, Iraola, Gregorio, Kahles, Andre, Kelly, Frank J., Knights, Kaymisha, Kyrpides, Nikos C., Labaj, Pawel P., Lee, Patrick K. H., Leung, Marcus H. Y., Ljungdahl, Per O., Mason-Buck, Gabriella, McGrath, Ken, Meydan, Cem, Mongodin, Emmanuel F., Moraes, Milton Ozorio, Nagarajan, Niranjan, Nieto-Caballero, Marina, Noushmehr, Houtan, Oliveira, Manuela, Ossowski, Stephan, Osuolale, Olayinka O., Ozcan, Orhan, Paez-Espino, David, Rascovan, Nicolas, Richard, Hugues, Ratsch, Gunnar, Schriml, Lynn M., Semmler, Torsten, Sezerman, Osman U., Shi, Leming, Shi, Tieliu, Song, Le Huu, Suzuki, Haruo, Court, Denise Syndercombe, Tighe, Scott W., Tong, Xinzhao, Udekwu, Klas, Ugalde, Juan A., Valentine, Brandon, Vassilev, Dimitar, Vayndorf, Elena M., Velavan, Thirumalaisamy P., Wu, Jun, Zambrano, Maria M., Zhu, Jifeng, Zhu, Sibo, Mason, Christopher E., Jang, Soojin, Siam, Rania

We present a global atlas of 4,728 metagenomic samples from mass-transit systems in 60 cities over 3 years, representing the first systematic, worldwide catalog of the urban microbial ecosystem. This atlas provides an annotated, geospatial profile of

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______1094::ee270c7c1a772e7cf9d89211b52da07d
https://pub.epsilon.slu.se/25006/

Additional file 3 of The impact of oxygen on the transcriptome of recombinant S. cerevisiae and P. pastoris - a comparative analysis

Autor: Baumann, Kristin, Dato, Laura, Graf, Alexandra B, Frascotti, Gianni, Dragosits, Martin, Porro, Danilo, Mattanovich, Diethard, Ferrer, Pau, Branduardi, Paola

Additional file 3:MetaCyc data Pichia pastoris. Regulated P. pastoris pathways in hypoxia vs. normoxia. Individual P. pastoris (recombinant strain) pathways that were transcriptionally regulated (i e. exceeding the log2 FC threshold of 0.59) in the c

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9cc297a9c78ef9e1299ad624578aa375