The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update

Autor: Abueg, L.A.L., Afgan, E., Allart, O., Awan, A.H., Bacon, W.A., Baker, D., Bassetti, M., Batut, B., Bernt, M., Blankenberg, D., Bombarely, A., Bretaudeau, A., Bromhead, C.J., Burke, M.L., Capon, P.K., Čech, M., Chavero-Díez, M., Chilton, J.M., Collins, T.J., Coppens, F., Coraor, N., Cuccuru, G., Cumbo, F., Davis, J., De Geest, P.F., de Koning, W., Demko, M., DeSanto, A., Domínguez Begines, J.M., Doyle, M.A., Droesbeke, B., Erxleben-Eggenhofer, A., Föll, M.C., Formenti, G., Fouilloux, A., Gangazhe, R., Genthon, T., Goecks, J., Gonzalez Beltran, A.N., Goonasekera, N.A., Goué, N., Griffin, T.J., Grüning, B.A., Guerler, A., Gundersen, S., Gustafsson, O.J.R., Hall, C., Harrop, T.W., Hecht, H., Heidari, A., Heisner, T., Heyl, F., Hiltemann, S., Hotz, H.-R., Hyde, C.J., Jagtap, P.D., Jakiela, J., Johnson, J.E., Joshi, J., Jossé, M., Jum'ah, Khaled, Kalaš, M., Kamieniecka, Katarzyna, Kayikcioglu, T., Konkol, M., Kostrykin, L., Kucher, N., Kumar, A., Kuntz, M., Lariviere, D., Lazarus, R., Le Bras, Y., Le Corguillé, G., Lee, J., Leo, S., Liborio, L., Libouban, R., López Tabernero, D., Lopez-Delisle, L., Los, L.S., Mahmoud, A., Makunin, I., Marin, P., Mehta, S., Mok, W., Moreno, P.A., Morier-Genoud, F., Mosher, S., Müller, T., Nasr, E., Nekrutenko, A., Nelson, T.M., Oba, A.J., Ostrovsky, A., Polunina, P.V., Poterlowicz, Krzysztof, Price, E.J., Price, G.R., Rasche, H., Raubenolt, B., Royaux, C., Sargent, L., Savage, M.T., Savchenko, V., Savchenko, D., Schatz, M.C., Seguineau, P., Serrano-Solano, B., Soranzo, N., Srikakulam, S.K., Suderman, K., Syme, A.E., Tangaro, M.A., Tedds, J.A., Tekman, M., Thang, W.C.M., Thanki, A.S., Uhl, M., van den Beek, M., Varshney, D., Vessio, J., Videm, P., Von Kuster, G., Watson, G.R., Whitaker-Allen, N., Winter, U., Wolstencroft, M., Zambelli, F., Zierep, P., Zoabi, R.

Yes
Galaxy (https://galaxyproject.org) is deployed globally, predominantly through free-to-use services, supporting user-driven research that broadens in scope each year. Users are attracted to public Galaxy services by platform stability, tool

Externí odkaz: http://hdl.handle.net/10454/19930

Strain-Induced Decoupling Drives Gold-Assisted Exfoliation of Large-Area Monolayer 2D Crystals

Autor: Ziewer, Jakob, Ghosh, Abyay, Hanušová, Michaela, Pirker, Luka, Frank, Otakar, Velický, Matěj, Grüning, Myrta, Huang, Fumin

Gold assisted exfoliation (GAE) is a groundbreaking mechanical exfoliation technique, producing centimeter scale single crystal monolayers of 2D materials. Such large, high quality films offer unparalleled advantages over the micron sized flakes typi

Externí odkaz: http://arxiv.org/abs/2412.05898

WorkflowHub: a registry for computational workflows

Autor: Gustafsson, Ove Johan Ragnar, Wilkinson, Sean R., Bacall, Finn, Pireddu, Luca, Soiland-Reyes, Stian, Leo, Simone, Owen, Stuart, Juty, Nick, Fernández, José M., Grüning, Björn, Brown, Tom, Ménager, Hervé, Capella-Gutierrez, Salvador, Coppens, Frederik, Goble, Carole

The rising popularity of computational workflows is driven by the need for repetitive and scalable data processing, sharing of processing know-how, and transparent methods. As both combined records of analysis and descriptions of processing steps, wo

Externí odkaz: http://arxiv.org/abs/2410.06941

Automated Computation of Therapies Using Failure Mode and Effects Analysis in the Medical Domain

Autor: Luttermann, Malte, Baake, Edgar, Bouchagiar, Juljan, Gebel, Benjamin, Grüning, Philipp, Manikwadura, Dilini, Schollemann, Franziska, Teifke, Elisa, Rostalski, Philipp, Möller, Ralf

Failure mode and effects analysis (FMEA) is a systematic approach to identify and analyse potential failures and their effects in a system or process. The FMEA approach, however, requires domain experts to manually analyse the FMEA model to derive ri

Externí odkaz: http://arxiv.org/abs/2405.03406

A first-principles study and mesoscopic modeling of two-dimensional spin and orbital fluctuations in FeSe

Autor: Ghosh, Abyay, Chudzinski, Piotr, Grüning, Myrta

We calculated the structural, electronic and magnetic properties of FeSe within density-functional theory at the generalized gradient approximation level. First, we studied how the bandwidth of the d-bands at the Fermi energy are renormalized by addi

Externí odkaz: http://arxiv.org/abs/2403.04802