Zobrazeno 1 - 10
of 14
pro vyhledávání: '"Gowri Nayar"'
Autor:
Gowri Nayar, Russ B. Altman
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 23, Iss , Pp 2727-2739 (2024)
Understanding protein-protein interactions (PPIs) and the pathways they comprise is essential for comprehending cellular functions and their links to specific phenotypes. Despite the prevalence of molecular data generated by high-throughput sequencin
Externí odkaz:
https://doaj.org/article/569e512a03a548b091b8536cd805a960
Autor:
Gowri Nayar, Ignacio Terrizzano, Ed Seabolt, Akshay Agarwal, Christina Boucher, Jaime Ruiz, Ilya B. Slizovskiy, James H. Kaufman, Noelle R. Noyes
Publikováno v:
Frontiers in Genetics, Vol 13 (2022)
Horizontal gene transfer mediated by conjugation is considered an important evolutionary mechanism of bacteria. It allows organisms to quickly evolve new phenotypic properties including antimicrobial resistance (AMR) and virulence. The frequency of c
Externí odkaz:
https://doaj.org/article/e92efee6dede40778680f04fcac97b5b
Autor:
Gowri Nayar, Edward E. Seabolt, Mark Kunitomi, Akshay Agarwal, Kristen L. Beck, Vandana Mukherjee, James H. Kaufman
Publikováno v:
Scientific Reports, Vol 11, Iss 1, Pp 1-11 (2021)
Abstract Rapid tests for active SARS-CoV-2 infections rely on reverse transcription polymerase chain reaction (RT-PCR). RT-PCR uses reverse transcription of RNA into complementary DNA (cDNA) and amplification of specific DNA (primer and probe) target
Externí odkaz:
https://doaj.org/article/b61c34dcf78a47d6ac990fe5517c9373
Autor:
Akshay Agarwal, Kristen L. Beck, Sara Capponi, Mark Kunitomi, Gowri Nayar, Edward Seabolt, Gandhar Mahadeshwar, Simone Bianco, Vandana Mukherjee, James H. Kaufman
Publikováno v:
Viruses, Vol 14, Iss 8, p 1837 (2022)
Epitopes are short amino acid sequences that define the antigen signature to which an antibody or T cell receptor binds. In light of the current pandemic, epitope analysis and prediction are paramount to improving serological testing and developing v
Externí odkaz:
https://doaj.org/article/4981dd0cc5fb49368f76070f0ab53537
Autor:
Kristen L. Beck, Edward Seabolt, Akshay Agarwal, Gowri Nayar, Simone Bianco, Harsha Krishnareddy, Timothy A. Ngo, Mark Kunitomi, Vandana Mukherjee, James H. Kaufman
Publikováno v:
Viruses, Vol 13, Iss 12, p 2426 (2021)
SARS-CoV-2 genomic sequencing efforts have scaled dramatically to address the current global pandemic and aid public health. However, autonomous genome annotation of SARS-CoV-2 genes, proteins, and domains is not readily accomplished by existing meth
Externí odkaz:
https://doaj.org/article/88041c92a4e64ff68aa635a2d5e4ac10
Autor:
James H. Kaufman, Harsha Krishnareddy, Gowri Nayar, Simone Bianco, Edward E. Seabolt, Kristen L. Beck, Mukherjee, Akshay Agarwal
SARS-CoV-2 genomic sequencing efforts have scaled dramatically to address the current global pandemic and aid public health. In this work, we analyzed a corpus of 66,000 SARS-CoV-2 genome sequences. We developed a novel semi-supervised pipeline for a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::61178d1a81e7eee3d75c3604c51984a7
https://doi.org/10.1101/2021.05.03.440524
https://doi.org/10.1101/2021.05.03.440524
Autor:
Kristen L. Beck, Gowri Nayar, Vandana Mukherjee, Edward E. Seabolt, Mark Kunitomi, James H. Kaufman, Akshay Agarwal
Publikováno v:
Scientific Reports
Scientific Reports, Vol 11, Iss 1, Pp 1-11 (2021)
Scientific Reports, Vol 11, Iss 1, Pp 1-11 (2021)
Rapid tests for active SARS-CoV-2 infections rely on reverse transcription polymerase chain reaction (RT-PCR). RT-PCR uses reverse transcription of RNA into complementary DNA (cDNA) and amplification of specific DNA (primer and probe) targets using p
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::eb12fa9782a86d341a547f8ad03820e9
https://doi.org/10.1038/s41598-021-88532-w
https://doi.org/10.1038/s41598-021-88532-w
Autor:
Gowri Nayar, Edward E. Seabolt, Vandana Mukherjee, Mark Kunitomi, James H. Kaufman, Akshay Agarwal, Kristen L. Beck
Rapid tests for active SARS-CoV-2 infections rely on reverse transcription polymerase chain reaction (RT-PCR). RT-PCR uses reverse transcription of RNA into complementary DNA (cDNA) and amplification of specific DNA (primer and probe) targets using p
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bb800b682bf9156eac92ada0c70767a2
https://doi.org/10.1101/2020.12.26.424429
https://doi.org/10.1101/2020.12.26.424429
Autor:
Harsha Krishnareddy, Mark Kuntomi, Eser Kandogan, Akshay Agarwal, Edward E. Seabolt, Kristen L. Beck, Ignacio Terrizzano, Gowri Nayar, Vandana Mukherjee, James H. Kaufman, Mary Roth
Publikováno v:
IEEE/ACM transactions on computational biology and bioinformatics. 19(2)
The rapid growth in biological sequence data is revolutionizing our understanding of genotypic diversity and challenging conventional approaches to informatics. With the increasing availability of genomic data, traditional bioinformatic tools require
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::74378f6d70814befbfaf01e2ac4ff94d
https://pubmed.ncbi.nlm.nih.gov/32877338
https://pubmed.ncbi.nlm.nih.gov/32877338
Autor:
Edward E. Seabolt, Ignacio Terrizzano, Ilya B. Slizovskiy, James H. Kaufman, Akshay Agarwal, Noelle R. Noyes, Gowri Nayar
Horizontal gene transfer mediated by integrative and conjugative elements (ICE) is considered an important evolutionary mechanism of bacteria. It allows organisms to quickly evolve new phenotypic properties including antimicrobial resistance (AMR) an
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6e54876a1f9d4caf650470ced8823ba3
https://doi.org/10.1101/2020.04.07.030320
https://doi.org/10.1101/2020.04.07.030320