Population genomics of the island thrush elucidates one of earth's great archipelagic radiations.

Autor: Reeve, Andrew Hart¹ (AUTHOR) a.reeve@snm.ku.dk, Gower, Graham² (AUTHOR), Pujolar, José Martín^1,3 (AUTHOR), Smith, Brian Tilston⁴ (AUTHOR), Petersen, Bent^5,6 (AUTHOR), Olsson, Urban^7,8 (AUTHOR), Haryoko, Tri⁹ (AUTHOR), Koane, Bonny^10,11 (AUTHOR), Maiah, Gibson¹⁰ (AUTHOR), Blom, Mozes P K¹² (AUTHOR), Ericson, Per G P¹³ (AUTHOR), Irestedt, Martin¹³ (AUTHOR), Racimo, Fernando² (AUTHOR), Jønsson, Knud Andreas¹ (AUTHOR)

Publikováno v: Evolution Letters. Feb2023, Vol. 7 Issue 1, p24-36. 13p.

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Efficient ancestry and mutation simulation with msprime 1.0

Autor: Baumdicker, Franz, Bisschop, Gertjan, Goldstein, Daniel, Gower, Graham, Ragsdale, Aaron P., Tsambos, Georgia, Zhu, Sha, Eldon, Bjarki, Ellerman, E. Castedo, Galloway, Jared G., Gladstein, Ariella L., Gorjanc, Gregor, Guo, Bing, Jeffery, Ben, Kretzschumar, Warren W., Lohse, Konrad, Matschiner, Michael, Nelson, Dominic, Pope, Nathaniel S., Quinto-Cortes, Consuelo D., Rodrigues, Murillo F., Saunack, Kumar, Sellinger, Thibaut, Thornton, Kevin, Van Kemenade, Hugo, Wohns, Anthony W., Wong, Yan, Gravel, Simon, Kern, Andrew D., Koskela, Jere, Ralph, Peter L., Kelleher, Jerome

Publikováno v: Baumdicker, Franz Bisschop, Gertjan Goldstein, Daniel Gower, Graham Ragsdale, Aaron P. Tsambos, Georgia Zhu, Sha Eldon, Bjarki Ellerman, E. Castedo Galloway, Jared G. Gladstein, Ariella L. Gorjanc, Gregor Guo, Bing Jeffery, Ben Kretzschumar, Warren W. Lohse, Konrad Matschiner, Michael Nelson, Dominic Pope, Nathaniel S. Quinto-Cortes, Consuelo D. Rodrigues, Murillo F. Saunack, Kumar Sellinger, Thibaut Thornton, Kevin Van Kemenade, Hugo Wohns, Anthony W. Wong, Yan Gravel, Simon Kern, Andrew D. Koskela, Jere Ralph, Peter L. Kelleher, Jerome . Efficient ancestry and mutation simulation with msprime 1.0. Genetics. 2022, 220(3)
Genetics

Externí odkaz: http://hdl.handle.net/10852/101258

Efficient ancestry and mutation simulation with msprime 1.0

Autor: Baumdicker, Franz, Bisschop, Gertjan, Goldstein, Daniel, Gower, Graham, Ragsdale, Aaron P., Tsambos, Georgia, Zhu, Sha, Eldon, Bjarki, Ellerman, Castedo E., Galloway, Jared G., Gladstein, Ariella L., Gorjanc, Gregor, Guo, Bing, Jeffery, Ben, Kretzschmar, Warren W., Lohse, Konrad, Matschiner, Michael, Nelson, Dominic, Pope, Nathaniel S., Quinto-Cortés, Consuelo D., Rodrigues, Murillo F., Saunack, Kumar, Sellinger, Thibaut, Thornton, Kevin, van Kemenade, Hugo, Wohns, Anthony W., Wong, H. Yan, Gravel, Simon, Kern, Andrew D., Koskela, Jere, Ralph, Peter L., Kelleher, Jerome

Publikováno v: Baumdicker, F, Bisschop, G, Goldstein, D, Gower, G, Ragsdale, A P, Tsambos, G, Zhu, S, Eldon, B, Ellerman, C E, Galloway, J G, Gladstein, A L, Gorjanc, G, Guo, B, Jeffery, B, Kretzschmar, W W, Lohse, K, Matschiner, M, Nelson, D, Pope, N S, Quinto-Cortés, C D, Rodrigues, M F, Saunack, K, Sellinger, T, Thornton, K, van Kemenade, H, Wohns, A W, Wong, H Y, Gravel, S, Kern, A D, Koskela, J, Ralph, P L & Kelleher, J 2021 ' Efficient ancestry and mutation simulation with msprime 1.0 ' bioRxiv . https://doi.org/10.1101/2021.08.31.457499

Stochastic simulation is a key tool in population genetics, since the models involved are often analytically intractable and simulation is usually the only way of obtaining ground-truth data to evaluate inferences. Because of this necessity, a large

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______3094::a89c60bf2807d74b4700fc88be43f9fa
https://hdl.handle.net/20.500.11820/86501e3a-b35c-478f-bbdf-ca90bba30bfd

A genomic exploration of the early evolution of extant cats and their sabre-toothed relatives:[version 1; peer review: 2 approved]

Autor: Westbury, Michael V., Barnett, Ross, Sandoval-Velasco, Marcela, Gower, Graham, Vieira, Filipe Garrett, de Manuel, Marc, Hansen, Anders J., Yamaguchi, Nobuyuki, Werdelin, Lars, Marques-Bonet, Tomas, Gilbert, M. Thomas P., Lorenzen, Eline D.

Publikováno v: Westbury, M V, Barnett, R, Sandoval-Velasco, M, Gower, G, Vieira, F G, de Manuel, M, Hansen, A J, Yamaguchi, N, Werdelin, L, Marques-Bonet, T, Gilbert, M T P & Lorenzen, E D 2021, ' A genomic exploration of the early evolution of extant cats and their sabre-toothed relatives : [version 1; peer review: 2 approved] ', Open Research Europe, vol. 1, 25 . https://doi.org/10.12688/openreseurope.13104.1

Background: The evolutionary relationships of Felidae during their Early-Middle Miocene radiation is contentious. Although the early common ancestors have been subsumed under the grade-group Pseudaelurus, this group is thought to be paraphyletic, inc

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______2751::6e58bfce82e00358d0b0292c96659fb2
https://curis.ku.dk/portal/da/publications/a-genomic-exploration-of-the-early-evolution-of-extant-cats-and-their-sabretoothed-relatives(a2318f3e-8fa7-4ac3-96c9-8ef49d575665).html