Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy.

Autor: Larivière D; Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA, USA., Abueg L; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA., Brajuka N; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA., Gallardo-Alba C; Bioinformatics Group, Department of Computer Science, Albert-Ludwigs University Freiburg, Freiburg, Germany., Grüning B; Bioinformatics Group, Department of Computer Science, Albert-Ludwigs University Freiburg, Freiburg, Germany., Ko BJ; Department of Agricultural Biotechnology and Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea., Ostrovsky A; Departments of Biology and Computer Science, Johns Hopkins University, Baltimore, MD, USA., Palmada-Flores M; Department of Medicine and Life Sciences (MELIS), Institut de Biologia Evolutiva, Universitat Pompeu Fabra-CSIC, Barcelona, Spain., Pickett BD; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Rabbani K; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA., Antunes A; CIIMAR/CIMAR, Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Porto, Portugal.; Department of Biology, Faculty of Sciences, University of Porto, Porto, Portugal., Balacco JR; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA., Chaisson MJP; Department of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA., Cheng H; Department of Data Sciences, Dana-Farber Cancer Institute, Boston, MA, USA.; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA., Collins J; Wellcome Sanger Institute, Cambridge, UK., Couture M; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA., Denisova A; Faculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University, Moscow, Russia., Fedrigo O; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA., Gallo GR; Department of Biosciences, University of Milan, Milan, Italy., Giani AM; BMRI, Weill Cornell Medical College, New York, NY, USA., Gooder GM; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA., Horan K; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA., Jain N; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA., Johnson C; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA., Kim H; Department of Agricultural Biotechnology and Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea.; eGnome, Inc., Seoul, Republic of Korea.; Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Republic of Korea., Lee C; Interdisciplinary Program in Bioinformatics, Seoul National University, Seoul, Republic of Korea.; Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, USA., Marques-Bonet T; Department of Medicine and Life Sciences (MELIS), Institut de Biologia Evolutiva, Universitat Pompeu Fabra-CSIC, Barcelona, Spain.; Catalan Institution of Research and Advanced Studies (ICREA), Barcelona, Spain.; CNAG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.; Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, Spain., O'Toole B; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA., Rhie A; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Secomandi S; Department of Biological Sciences, University of Cyprus, Nicosia, Cyprus., Sozzoni M; University of Florence, Department of Biology, Florence, Italy., Tilley T; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA., Uliano-Silva M; Tree of Life, Wellcome Sanger Institute, Cambridge, UK., van den Beek M; Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA, USA., Williams RW; Department of Genetics, Genomics and Informatics, University of Tennessee Health Science Center, Memphis, TN, USA., Waterhouse RM; Department of Ecology & Evolution and Swiss Institute of Bioinformatics, University of Lausanne, Lausanne, Switzerland., Phillippy AM; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, USA., Jarvis ED; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA. ejarvis@rockefeller.edu., Schatz MC; Departments of Biology and Computer Science, Johns Hopkins University, Baltimore, MD, USA. mschatz@cs.jhu.edu., Nekrutenko A; Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, PA, USA. anton@nekrut.org., Formenti G; Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA. gformenti@rockefeller.edu.

Publikováno v: Nature biotechnology [Nat Biotechnol] 2024 Mar; Vol. 42 (3), pp. 367-370.