cytoNet: Spatiotemporal Network Analysis of Cell Communities

Autor: Yuenhee Kim, George Britton, Amina A. Qutub, Chenyue Wendy Hu, Grandel Ne, Long Bl, Andrew Ligeralde, David T. Ryan, Gonzalez Porras Ma, Son H, Jacob T. Robinson, Brey E, Shannonhouse J, Maloney Z, Aryeh Warmflash, Arun S. Mahadevan, Stojkova K

We introduce cytoNet, a cloud-based tool to characterize cell populations from microscopy images. cytoNet quantifies spatial topology and functional relationships in cell communities using principles of network science. Capturing multicellular dynami

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::d81da0e37a25a6d1a6344659f2fc7769
https://doi.org/10.1101/180273

CTB-targeted protocells enhance ability of lanthionine ketenamine analogs to induce autophagy in motor neuron-like cells.

Autor: Gonzalez Porras MA; Department of Biomedical Engineering, University of Texas at San Antonio, San Antonio, TX, USA., Gransee HM; Department of Anesthesiology & Perioperative Medicine, Mayo Clinic, Rochester, MN, USA., Denton TT; Department of Pharmaceutical Sciences, College of Pharmacy and Pharmaceutical Sciences, Washington State University Health Sciences Spokane, Spokane, WA, USA.; Department of Translational Medicine and Physiology, Elson S. Floyd, College of Medicine, Washington State University Health Sciences Spokane, Spokane, WA, USA.; Steve Gleason Institute for Neuroscience, Washington State University Health Sciences Spokane, Spokane, WA, USA., Shen D; Department of Pharmaceutical Sciences, College of Pharmacy and Pharmaceutical Sciences, Washington State University Health Sciences Spokane, Spokane, WA, USA., Webb KL; Department of Physiology & Biomedical Engineering, Mayo Clinic, Rochester, MN, USA., Brinker CJ; Center for Micro-Engineered Materials, University of New Mexico, Albuquerque, NM, USA.; Department of Chemical and Biological Engineering, University of New Mexico, Albuquerque, NM, USA.; Department of Molecular Genetics and Microbiology, University of New Mexico, Albuquerque, NM, USA., Noureddine A; Center for Micro-Engineered Materials, University of New Mexico, Albuquerque, NM, USA.; Department of Chemical and Biological Engineering, University of New Mexico, Albuquerque, NM, USA., Sieck GC; Department of Anesthesiology & Perioperative Medicine, Mayo Clinic, Rochester, MN, USA.; Department of Physiology & Biomedical Engineering, Mayo Clinic, Rochester, MN, USA., Mantilla CB; Department of Anesthesiology & Perioperative Medicine, Mayo Clinic, Rochester, MN, USA. mantilla.carlos@mayo.edu.; Department of Physiology & Biomedical Engineering, Mayo Clinic, Rochester, MN, USA. mantilla.carlos@mayo.edu.; MB2-758, St Mary's Hospital, Mayo Clinic, 200 First St SW, Rochester, MN, 55905, USA. mantilla.carlos@mayo.edu.

Publikováno v: Scientific reports [Sci Rep] 2023 Feb 13; Vol. 13 (1), pp. 2581. Date of Electronic Publication: 2023 Feb 13.

Laminin-α4 Negatively Regulates Adipocyte Beiging Through the Suppression of AMPKα in Male Mice.

Autor: Goddi A; Committee on Molecular Metabolism and Nutrition, The University of Chicago, Chicago, Illinois 60637, USA., Carmona A; Section of Endocrinology, Diabetes, and Metabolism, The University of Chicago, Chicago, Illinois 60637, USA., Park SY; Section of Endocrinology, Diabetes, and Metabolism, The University of Chicago, Chicago, Illinois 60637, USA., Dalgin G; Section of Endocrinology, Diabetes, and Metabolism, The University of Chicago, Chicago, Illinois 60637, USA., Gonzalez Porras MA; Department of Biomedical Engineering and Chemical Engineering, The University of Texas at San Antonio, San Antonio, Texas 78249, USA., Brey EM; Department of Biomedical Engineering and Chemical Engineering, The University of Texas at San Antonio, San Antonio, Texas 78249, USA., Cohen RN; Committee on Molecular Metabolism and Nutrition, The University of Chicago, Chicago, Illinois 60637, USA.; Section of Endocrinology, Diabetes, and Metabolism, The University of Chicago, Chicago, Illinois 60637, USA.

Publikováno v: Endocrinology [Endocrinology] 2022 Oct 11; Vol. 163 (11).

cytoNet: Spatiotemporal network analysis of cell communities.

Autor: Mahadevan AS; Department of Bioengineering, University of Pennsylvania; Philadelphia, Pennsylvania, United States of America.; Department of Bioengineering, Rice University, Houston, Texas, United States of America., Long BL; Department of Bioengineering, Rice University, Houston, Texas, United States of America.; Department of Biomedical Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America.; Department of Computer Science, University of Texas at San Antonio, San Antonio, Texas, United States of America., Hu CW; Department of Bioengineering, Rice University, Houston, Texas, United States of America., Ryan DT; Department of Bioengineering, Rice University, Houston, Texas, United States of America., Grandel NE; Systems, Synthetic and Physical Biology Program, Rice University, Houston, Texas, United States of America., Britton GL; Systems, Synthetic and Physical Biology Program, Rice University, Houston, Texas, United States of America., Bustos M; Department of Biomedical Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America., Gonzalez Porras MA; Department of Biomedical Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America., Stojkova K; Department of Biomedical Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America., Ligeralde A; Biophysics Graduate Program, University of California, Berkeley, California, United States of America., Son H; Department of Oral & Maxillofacial Surgery, University of Texas Health Science Center at San Antonio, San Antonio, Texas, United States of America., Shannonhouse J; Department of Oral & Maxillofacial Surgery, University of Texas Health Science Center at San Antonio, San Antonio, Texas, United States of America., Robinson JT; Department of Electrical and Computer Engineering, Rice University, Houston, Texas, United States of America., Warmflash A; Systems, Synthetic and Physical Biology Program, Rice University, Houston, Texas, United States of America.; Department of Biosciences, Rice University, Houston, Texas, United States of America., Brey EM; Department of Biomedical Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America.; UTSA-UT Health Joint Graduate Group in Biomedical Engineering, San Antonio, Texas, United States of America., Kim YS; Department of Oral & Maxillofacial Surgery, University of Texas Health Science Center at San Antonio, San Antonio, Texas, United States of America.; UTSA-UT Health Joint Graduate Group in Biomedical Engineering, San Antonio, Texas, United States of America.; Programs in Integrated Biomedical Sciences, Translational Sciences, Radiological Sciences, University of Texas Health Science Center at San Antonio, San Antonio, Texas, United States of America., Qutub AA; Department of Biomedical Engineering, University of Texas at San Antonio, San Antonio, Texas, United States of America.; UTSA-UT Health Joint Graduate Group in Biomedical Engineering, San Antonio, Texas, United States of America.; UTSA AI MATRIX Consortium, San Antonio, Texas, United States of America.

Publikováno v: PLoS computational biology [PLoS Comput Biol] 2022 Jun 13; Vol. 18 (6), pp. e1009846. Date of Electronic Publication: 2022 Jun 13 (Print Publication: 2022).

Integrins and extracellular matrix proteins modulate adipocyte thermogenic capacity.

Autor: Gonzalez Porras MA; Department of Biomedical Engineering and Chemical Engineering, AET 1.102, The University of Texas at San Antonio, 1 UTSA Circle, San Antonio, TX, 78249, USA., Stojkova K; Department of Biomedical Engineering and Chemical Engineering, AET 1.102, The University of Texas at San Antonio, 1 UTSA Circle, San Antonio, TX, 78249, USA., Vaicik MK; Department of Biomedical Engineering, Illinois Institute of Technology, Chicago, IL, USA., Pelowe A; Department of Biomedical Engineering, Yale University, New Haven, CT, USA., Goddi A; Section of Endocrinology, Diabetes, and Metabolism, Department of Medicine, University of Chicago, Chicago, IL, USA., Carmona A; Section of Endocrinology, Diabetes, and Metabolism, Department of Medicine, University of Chicago, Chicago, IL, USA., Long B; Department of Biomedical Engineering and Chemical Engineering, AET 1.102, The University of Texas at San Antonio, 1 UTSA Circle, San Antonio, TX, 78249, USA., Qutub AA; Department of Biomedical Engineering and Chemical Engineering, AET 1.102, The University of Texas at San Antonio, 1 UTSA Circle, San Antonio, TX, 78249, USA., Gonzalez A; Department of Biomedical Engineering, Yale University, New Haven, CT, USA., Cohen RN; Section of Endocrinology, Diabetes, and Metabolism, Department of Medicine, University of Chicago, Chicago, IL, USA., Brey EM; Department of Biomedical Engineering and Chemical Engineering, AET 1.102, The University of Texas at San Antonio, 1 UTSA Circle, San Antonio, TX, 78249, USA. eric.brey@utsa.edu.

Publikováno v: Scientific reports [Sci Rep] 2021 Mar 08; Vol. 11 (1), pp. 5442. Date of Electronic Publication: 2021 Mar 08.