From soil to sequence: filling the critical gap in genome-resolved metagenomics is essential to the future of soil microbial ecology.

Autor: Anthony WE; Pacific Northwest National Laboratory, Richland, WA, 99354, USA. winston.anthony@pnnl.gov., Allison SD; University of California Irvine, Irvine, CA, USA.; Department of Earth System Science, University of California, Irvine, CA, USA., Broderick CM; W.K. Kellogg Biological Station, Michigan State University, Hickory Corners, MI, USA., Chavez Rodriguez L; University of California Irvine, Irvine, CA, USA., Clum A; Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Cross H; National Ecological Observatory Network - Battelle, Boulder, CO, USA., Eloe-Fadrosh E; Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Evans S; W.K. Kellogg Biological Station, Michigan State University, Hickory Corners, MI, USA., Fairbanks D; University of California Riverside, Riverside, CA, USA.; The University of Arizona, Tucson, AZ, USA., Gallery R; The University of Arizona, Tucson, AZ, USA., Gontijo JB; University of California Davis, Davis, CA, USA., Jones J; W.K. Kellogg Biological Station, Michigan State University, Hickory Corners, MI, USA., McDermott J; Pacific Northwest National Laboratory, Richland, WA, 99354, USA., Pett-Ridge J; Lawrence Livermore National Laboratory, Livermore, CA, USA.; Life & Environmental Sciences Department, University of California Merced, Merced, CA, 95343, USA., Record S; University of Maine, Orono, ME, USA., Rodrigues JLM; Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; University of California Davis, Davis, CA, USA., Rodriguez-Reillo W; Harvard Medical School, Boston, MA, USA., Shek KL; University of New Hampshire, Durham, NH, USA., Takacs-Vesbach T; University of New Mexico, Albuquerque, NM, USA., Blanchard JL; University of Massachusetts Amherst, Amherst, MA, USA. jlb@umass.edu.

Publikováno v: Environmental microbiome [Environ Microbiome] 2024 Aug 02; Vol. 19 (1), pp. 56. Date of Electronic Publication: 2024 Aug 02.

Linking above and belowground carbon sequestration, soil organic matter properties, and soil health in Brazilian Atlantic Forest restoration.

Autor: Bieluczyk W; University of São Paulo, Center for Nuclear Energy in Agriculture, Cell and Molecular Biology Laboratory, 303 Centenário Avenue, Piracicaba, SP, 13416-000, Brazil; University of São Paulo, Center for Nuclear Energy in Agriculture, Isotopic Ecology Laboratory, 303 Centenário Avenue, Piracicaba, SP, 13416-000, Brazil. Electronic address: wanderleibieluczyk@gmail.com., Asselta FO; University of São Paulo, Center for Nuclear Energy in Agriculture, Cell and Molecular Biology Laboratory, 303 Centenário Avenue, Piracicaba, SP, 13416-000, Brazil. Electronic address: Fernanda.asselta@usp.br., Navroski D; University of São Paulo, Center for Nuclear Energy in Agriculture, Cell and Molecular Biology Laboratory, 303 Centenário Avenue, Piracicaba, SP, 13416-000, Brazil. Electronic address: deisinavroski@usp.br., Gontijo JB; University of São Paulo, Center for Nuclear Energy in Agriculture, Cell and Molecular Biology Laboratory, 303 Centenário Avenue, Piracicaba, SP, 13416-000, Brazil. Electronic address: juliabrandao@usp.br., Venturini AM; Princeton Institute for International and Regional Studies, Princeton University, Princeton, NJ, USA; Department of Biology, Stanford University, Stanford, CA, USA. Electronic address: andressa.mv@gmail.com., Mendes LW; University of São Paulo, Center for Nuclear Energy in Agriculture, Cell and Molecular Biology Laboratory, 303 Centenário Avenue, Piracicaba, SP, 13416-000, Brazil. Electronic address: lwmendes@cena.usp.br., Simon CP; University of São Paulo, Center for Nuclear Energy in Agriculture, Isotopic Ecology Laboratory, 303 Centenário Avenue, Piracicaba, SP, 13416-000, Brazil. Electronic address: carlasimon@usp.br., Camargo PB; University of São Paulo, Center for Nuclear Energy in Agriculture, Isotopic Ecology Laboratory, 303 Centenário Avenue, Piracicaba, SP, 13416-000, Brazil. Electronic address: pcamargo@cena.usp.br., Tadini AM; Brazilian Agricultural Research Corporation, Embrapa Instrumentation, 1452 XV de Novembro Street, São Carlos, SP, 13560-970, Brazil. Electronic address: amandatadini@hotmail.com., Martin-Neto L; Brazilian Agricultural Research Corporation, Embrapa Instrumentation, 1452 XV de Novembro Street, São Carlos, SP, 13560-970, Brazil. Electronic address: ladislau.martin@embrapa.br., Bendassolli JA; University of São Paulo, Center for Nuclear Energy in Agriculture, Stable Isotope Laboratory, 303 Centenário Avenue, Piracicaba, SP, 13416-000, Brazil. Electronic address: jab@cena.usp.br., Rodrigues RR; University of São Paulo, 'Luiz de Queiroz' College of Agriculture, Laboratory of Ecology and Forest Restoration, 11 Pádua Dias Avenue, Piracicaba, SP, 13418-900, Brazil. Electronic address: rrresalq@usp.br., van der Putten WH; Netherlands Institute of Ecology, NIOO-KNAW, Department of Terrestrial Ecology, 6708, PB, Wageningen, Netherlands; Laboratory of Nematology, Wageningen University, P.O. Box 8123, 6700, ES, Wageningen, the Netherlands. Electronic address: W.vanderPutten@nioo.knaw.nl., Tsai SM; University of São Paulo, Center for Nuclear Energy in Agriculture, Cell and Molecular Biology Laboratory, 303 Centenário Avenue, Piracicaba, SP, 13416-000, Brazil. Electronic address: tsai@cena.usp.br.

Publikováno v: Journal of environmental management [J Environ Manage] 2023 Oct 15; Vol. 344, pp. 118573. Date of Electronic Publication: 2023 Jul 15.

Assessment of prokaryotic communities in Southwestern Atlantic deep-sea sediments reveals prevalent methanol-oxidising Methylomirabilales.

Autor: Peres FV; Department of Biological Oceanography, Oceanographic Institute, University of São Paulo, Praça do Oceanográfico, 191, São Paulo, CEP: 05508-120, Brazil., Paula FS; Department of Biological Oceanography, Oceanographic Institute, University of São Paulo, Praça do Oceanográfico, 191, São Paulo, CEP: 05508-120, Brazil. fabianaspaula@gmail.com., Bendia AG; Department of Biological Oceanography, Oceanographic Institute, University of São Paulo, Praça do Oceanográfico, 191, São Paulo, CEP: 05508-120, Brazil., Gontijo JB; Cell and Molecular Biology Laboratory, Centre for Nuclear Energy in Agriculture, University of São Paulo, Piracicaba, Brazil., de Mahiques MM; Department of Physical, Chemical and Geological Oceanography, Oceanographic Institute, University of São Paulo, São Paulo, Brazil., Pellizari VH; Department of Biological Oceanography, Oceanographic Institute, University of São Paulo, Praça do Oceanográfico, 191, São Paulo, CEP: 05508-120, Brazil.

Publikováno v: Scientific reports [Sci Rep] 2023 Aug 07; Vol. 13 (1), pp. 12782. Date of Electronic Publication: 2023 Aug 07.

Metagenome-Assembled Genomes from Amazonian Soil Microbial Consortia.

Autor: Mandro JA; Cell and Molecular Biology Laboratory, Center for Nuclear Energy in Agriculture, University of São Paulo, Piracicaba, SP, Brazil., Nakamura FM; Cell and Molecular Biology Laboratory, Center for Nuclear Energy in Agriculture, University of São Paulo, Piracicaba, SP, Brazil., Gontijo JB; Cell and Molecular Biology Laboratory, Center for Nuclear Energy in Agriculture, University of São Paulo, Piracicaba, SP, Brazil., Tsai SM; Cell and Molecular Biology Laboratory, Center for Nuclear Energy in Agriculture, University of São Paulo, Piracicaba, SP, Brazil., Venturini AM; Cell and Molecular Biology Laboratory, Center for Nuclear Energy in Agriculture, University of São Paulo, Piracicaba, SP, Brazil.; Princeton Institute for International and Regional Studies, Princeton University, Princeton, New Jersey, USA.

Publikováno v: Microbiology resource announcements [Microbiol Resour Announc] 2022 Nov 17; Vol. 11 (11), pp. e0080422. Date of Electronic Publication: 2022 Oct 27.

Insights into the Genomic Potential of a Methylocystis sp. from Amazonian Floodplain Sediments.

Autor: Gontijo JB; Cell and Molecular Biology Laboratory, Center for Nuclear Energy in Agriculture, University of São Paulo (CENA-USP), Piracicaba 13416-000, Brazil., Paula FS; Cell and Molecular Biology Laboratory, Center for Nuclear Energy in Agriculture, University of São Paulo (CENA-USP), Piracicaba 13416-000, Brazil.; Department of Biological Oceanography, Oceanographic Institute, University of São Paulo, São Paulo 05508-120, Brazil., Venturini AM; Cell and Molecular Biology Laboratory, Center for Nuclear Energy in Agriculture, University of São Paulo (CENA-USP), Piracicaba 13416-000, Brazil.; Princeton Institute for International and Regional Studies, Princeton University, Princeton, NJ 08544-1019, USA., Mandro JA; Cell and Molecular Biology Laboratory, Center for Nuclear Energy in Agriculture, University of São Paulo (CENA-USP), Piracicaba 13416-000, Brazil., Bodelier PLE; Netherlands Institute of Ecology (NIOO-KNAW), 6708 PB Wageningen, The Netherlands., Tsai SM; Cell and Molecular Biology Laboratory, Center for Nuclear Energy in Agriculture, University of São Paulo (CENA-USP), Piracicaba 13416-000, Brazil.

Publikováno v: Microorganisms [Microorganisms] 2022 Aug 30; Vol. 10 (9). Date of Electronic Publication: 2022 Aug 30.