Zobrazeno 1 - 10
of 51
pro vyhledávání: '"Gongchao Jing"'
Autor:
Jia Zhang, Lihui Ren, Lei Zhang, Yanhai Gong, Teng Xu, Xiaohang Wang, Cheng Guo, Lei Zhai, Xuejian Yu, Ying Li, Pengfei Zhu, Rongze Chen, Xiaoyan Jing, Gongchao Jing, Shiqi Zhou, Mingyue Xu, Chen Wang, Changkai Niu, Yuanyuan Ge, Bo Ma, Gaishuang Shang, Yunlong Cui, Su Yao, Jian Xu
Publikováno v:
iMeta, Vol 2, Iss 3, Pp n/a-n/a (2023)
Abstract Rapid expansion of the probiotics industry demands fast, sensitive, comprehensive, and low‐cost strategies for quality assessment. Here, we introduce a culture‐free, one‐cell‐resolution, phenome‐genome‐combined strategy called Si
Externí odkaz:
https://doaj.org/article/249e3098b55a4383b3a9a2ece58e4820
Autor:
Yixuan Li, Zizhong Liu, Gui Luo, Haiyun Lan, Pu Chen, Ruikai Du, Gongchao Jing, Lu Liu, Xiaohan Cui, Yongzhi Li, Yanping Han, Jian Xu, Hongwei Zhu, Shukuan Ling, Yingxian Li
Publikováno v:
iScience, Vol 26, Iss 5, Pp 106615- (2023)
Summary: Spaceflight is rigorous and dangerous environment which can negatively affect astronauts’ health and the entire mission. The 60 days of 6° head-down bed rest (HDBR) experiment provided us with an opportunity to trace the change of gut mic
Externí odkaz:
https://doaj.org/article/517ac2753661488687d706ae75b38c7a
Autor:
Zheng Sun, Shi Huang, Pengfei Zhu, Lam Tzehau, Helen Zhao, Jia Lv, Rongchao Zhang, Lisha Zhou, Qianya Niu, Xiuping Wang, Meng Zhang, Gongchao Jing, Zhenmin Bao, Jiquan Liu, Shi Wang, Jian Xu
Publikováno v:
Genome Biology, Vol 23, Iss 1, Pp 1-22 (2022)
Abstract Microbiome samples with low microbial biomass or severe DNA degradation remain challenging for amplicon-based or whole-metagenome sequencing approaches. Here, we introduce 2bRAD-M, a highly reduced and cost-effective strategy which only sequ
Externí odkaz:
https://doaj.org/article/c2475a404aa343d08b0fbc331eb034c2
Publikováno v:
BMC Genomics, Vol 22, Iss 1, Pp 1-11 (2021)
Abstract Background Due to their much lower costs in experiment and computation than metagenomic whole-genome sequencing (WGS), 16S rRNA gene amplicons have been widely used for predicting the functional profiles of microbiome, via software tools suc
Externí odkaz:
https://doaj.org/article/0fd11076f97a4555a69dc4ce7655c2dc
Autor:
Yuzhu Chen, Jian Li, Yufeng Zhang, Mingqian Zhang, Zheng Sun, Gongchao Jing, Shi Huang, Xiaoquan Su
Publikováno v:
iMeta, Vol 1, Iss 1, Pp n/a-n/a (2022)
Abstract Massive microbiome sequencing data has been generated, which elucidates associations between microbes and their environmental phenotypes such as host health or ecosystem status. Outstanding bioinformatic tools are the basis to decipher the b
Externí odkaz:
https://doaj.org/article/80d7073aad2b4e84a6252ae53ffe67ee
Publikováno v:
Computational and Structural Biotechnology Journal, Vol 18, Iss , Pp 2075-2080 (2020)
During the past decade, tremendous amount of microbiome sequencing data has been generated to study on the dynamic associations between microbial profiles and environments. How to precisely and efficiently decipher large-scale of microbiome data and
Externí odkaz:
https://doaj.org/article/7ff16741ae0240d7804003f7dcc12ece
Autor:
Gongchao Jing, Yufeng Zhang, Lu Liu, Zengbin Wang, Zheng Sun, Rob Knight, Xiaoquan Su, Jian Xu
Publikováno v:
mSystems, Vol 6, Iss 4 (2021)
ABSTRACT Microbiomes are inherently linked by their structural similarity, yet the global features of such similarity are not clear. Here, we propose as a solution a search-based microbiome transition network. By traversing a composition-similarity-b
Externí odkaz:
https://doaj.org/article/97b6c589d01745018ef64fd8966f0b79
Autor:
Shi Huang, Tao He, Feng Yue, Xiujun Xu, Lijiang Wang, Pengfei Zhu, Fei Teng, Zheng Sun, Xiaohui Liu, Gongchao Jing, Xiaoquan Su, Lijian Jin, Jiquan Liu, Jian Xu
Publikováno v:
mBio, Vol 12, Iss 2 (2021)
A significant portion of world population still fails to brush teeth daily. As a result, the majority of the global adult population is afflicted with chronic gingivitis, and if it is left untreated, some of them will eventually suffer from periodont
Externí odkaz:
https://doaj.org/article/afd5918fca714fd39bb789cd2c343bc2
Autor:
Gongchao Jing, Lu Liu, Zengbin Wang, Yufeng Zhang, Li Qian, Chunxiao Gao, Meng Zhang, Min Li, Zhenkun Zhang, Xiaohan Liu, Jian Xu, Xiaoquan Su
Publikováno v:
mSystems, Vol 6, Iss 1 (2021)
ABSTRACT Metagenomic data sets from diverse environments have been growing rapidly. To ensure accessibility and reusability, tools that quickly and informatively correlate new microbiomes with existing ones are in demand. Here, we introduce Microbiom
Externí odkaz:
https://doaj.org/article/90907e12b77e4f55bfb38c7fae2654a6
Autor:
Xiaoquan Su, Gongchao Jing, Zheng Sun, Lu Liu, Zhenjiang Xu, Daniel McDonald, Zengbin Wang, Honglei Wang, Antonio Gonzalez, Yufeng Zhang, Shi Huang, Gavin Huttley, Rob Knight, Jian Xu
Publikováno v:
mSystems, Vol 5, Iss 2 (2020)
ABSTRACT Microbiome-based disease classification depends on well-validated disease-specific models or a priori organismal markers. These are lacking for many diseases. Here, we present an alternative, search-based strategy for disease detection and c
Externí odkaz:
https://doaj.org/article/6392988b2a2f43b491e1fb8de1f441c5