Stability of temperate coral Astrangia poculata microbiome is reflected across different sequencing methodologies.

Autor: Goldsmith DB; St. Petersburg Coastal and Marine Science Center, U.S. Geological Survey, St. Petersburg, FL 33701, USA., Pratte ZA; School of Biology, Georgia Institute of Technology, Atlanta, GA 30332, USA., Kellogg CA; St. Petersburg Coastal and Marine Science Center, U.S. Geological Survey, St. Petersburg, FL 33701, USA., Snader SE; Cherokee Nation Technologies, contracted to U.S. Geological Survey, St. Petersburg, FL 33701, USA., Sharp KH; Department of Biology, Marine Biology and Environmental Science, Roger Williams University, Bristol, RI 02809, USA.

Publikováno v: AIMS microbiology [AIMS Microbiol] 2019 Mar 01; Vol. 5 (1), pp. 62-76. Date of Electronic Publication: 2019 Mar 01 (Print Publication: 2019).

Genomes of ubiquitous marine and hypersaline Hydrogenovibrio, Thiomicrorhabdus and Thiomicrospira spp. encode a diversity of mechanisms to sustain chemolithoautotrophy in heterogeneous environments.

Autor: Scott KM; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Williams J; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Porter CMB; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Russel S; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Harmer TL; Biology Program, Stockton University, Galloway, NJ, USA., Paul JH; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Antonen KM; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Bridges MK; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Camper GJ; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Campla CK; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Casella LG; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Chase E; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Conrad JW; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Cruz MC; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Dunlap DS; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Duran L; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Fahsbender EM; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Goldsmith DB; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Keeley RF; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Kondoff MR; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Kussy BI; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Lane MK; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Lawler S; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Leigh BA; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Lewis C; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Lostal LM; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Marking D; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Mancera PA; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., McClenthan EC; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., McIntyre EA; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Mine JA; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Modi S; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Moore BD; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Morgan WA; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Nelson KM; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Nguyen KN; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Ogburn N; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Parrino DG; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Pedapudi AD; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Pelham RP; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Preece AM; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Rampersad EA; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Richardson JC; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Rodgers CM; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Schaffer BL; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Sheridan NE; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Solone MR; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Staley ZR; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Tabuchi M; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Waide RJ; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Wanjugi PW; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Young S; Department of Integrative Biology, University of South Florida, 4202 East Fowler Avenue, Tampa, FL, 33620, USA., Clum A; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA., Daum C; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA., Huntemann M; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA., Ivanova N; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA., Kyrpides N; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA., Mikhailova N; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA., Palaniappan K; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA., Pillay M; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA., Reddy TBK; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA., Shapiro N; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA., Stamatis D; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA., Varghese N; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA., Woyke T; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA., Boden R; School of Biological & Marine Sciences, University of Plymouth, Drake Circus, Plymouth, UK.; Sustainable Earth Institute, University of Plymouth, Drake Circus, Plymouth, UK., Freyermuth SK; Department of Biochemistry, University of Missouri, Columbia, MO, USA., Kerfeld CA; MSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, MI, USA.; Department of Plant and Microbial Biology, University of California, Berkeley, CA, USA.; MBIB Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.

Publikováno v: Environmental microbiology [Environ Microbiol] 2018 Aug; Vol. 20 (8), pp. 2686-2708. Date of Electronic Publication: 2018 Apr 06.

Towards quantitative viromics for both double-stranded and single-stranded DNA viruses.

Autor: Roux S; Department of Microbiology, The Ohio State University , Columbus , OH , United States., Solonenko NE; Department of Microbiology, The Ohio State University , Columbus , OH , United States., Dang VT; Department of Microbiology, Ha Long University , Uong Bi , Quang Ninh , Vietnam., Poulos BT; Department of Ecology and Evolutionary Biology, University of Arizona , Tucson , AZ , United States., Schwenck SM; Department of Ecology and Evolutionary Biology, University of Arizona , Tucson , AZ , United States., Goldsmith DB; College of Marine Science, University of South Florida , St. Petersburg , FL , United States., Coleman ML; Department of the Geophysical Sciences, University of Chicago , Chicago , IL , United States., Breitbart M; College of Marine Science, University of South Florida , St. Petersburg , FL , United States., Sullivan MB; Department of Microbiology, The Ohio State University, Columbus, OH, United States; Department of Civil, Environmental and Geodetic Engineering, The Ohio State University, Columbus, OH, United States.

Publikováno v: PeerJ [PeerJ] 2016 Dec 08; Vol. 4, pp. e2777. Date of Electronic Publication: 2016 Dec 08 (Print Publication: 2016).

Deep sequencing of the viral phoH gene reveals temporal variation, depth-specific composition, and persistent dominance of the same viral phoH genes in the Sargasso Sea.

Autor: Goldsmith DB; College of Marine Science, University of South Florida , St. Petersburg, FL , USA., Parsons RJ; Bermuda Institute of Ocean Sciences , St. George's , Bermuda., Beyene D; Department of Mathematics and Statistics, San Diego State University , San Diego, CA , USA., Salamon P; Department of Mathematics and Statistics, San Diego State University , San Diego, CA , USA., Breitbart M; College of Marine Science, University of South Florida , St. Petersburg, FL , USA.

Publikováno v: PeerJ [PeerJ] 2015 Jun 16; Vol. 3, pp. e997. Date of Electronic Publication: 2015 Jun 16 (Print Publication: 2015).

Development of phoH as a novel signature gene for assessing marine phage diversity.

Autor: Goldsmith DB; College of Marine Science, University of South Florida, St. Petersburg, FL 33701, USA., Crosti G, Dwivedi B, McDaniel LD, Varsani A, Suttle CA, Weinbauer MG, Sandaa RA, Breitbart M

Publikováno v: Applied and environmental microbiology [Appl Environ Microbiol] 2011 Nov; Vol. 77 (21), pp. 7730-9. Date of Electronic Publication: 2011 Sep 16.