Zobrazeno 1 - 10
of 355
pro vyhledávání: '"Goldman Nick"'
Autor:
Ghosh, Tanay, Almeida, Rafael G., Zhao, Chao, Mannioui, Abdelkrim, Martin, Elodie, Fleet, Alex, Chen, Civia Z., Assinck, Peggy, Ellams, Sophie, Gonzalez, Ginez A., Graham, Stephen C., Rowitch, David H., Stott, Katherine, Adams, Ian, Zalc, Bernard, Goldman, Nick, Lyons, David A., Franklin, Robin J.M.
Publikováno v:
In Cell 15 February 2024 187(4):814-830
Akademický článek
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Autor:
Massingham Tim, Goldman Nick
Publikováno v:
BMC Bioinformatics, Vol 13, Iss 1, p 145 (2012)
Abstract Background The Exact Call Chemistry for the SOLiD Next-Generation Sequencing platform augments the two-base-encoding chemistry with an additional round of ligation, using an alternative set of probes, that allows some mistakes made when read
Externí odkaz:
https://doaj.org/article/c0215e8b4aa74392a0ae9dc6be613ff6
Publikováno v:
BMC Bioinformatics, Vol 12, Iss 1, p 104 (2011)
Abstract Background The Monte Carlo simulation of sequence evolution is routinely used to assess the performance of phylogenetic inference methods and sequence alignment algorithms. Progress in the field of molecular evolution fuels the need for more
Externí odkaz:
https://doaj.org/article/10131c55683d42e2a5fc2401faf54f1b
Autor:
Goldman Nick, Löytynoja Ari
Publikováno v:
BMC Bioinformatics, Vol 11, Iss 1, p 579 (2010)
Abstract Background Phylogeny-aware progressive alignment has been found to perform well in phylogenetic alignment benchmarks and to produce superior alignments for the inference of selection on codon sequences. Its implementation in the PRANK alignm
Externí odkaz:
https://doaj.org/article/432cf55746cb458eb41c7006af308413
Autor:
Kosiol Carolin, Chao Sharon, Bradley Robert K, Bendaña Yuri R, Uzilov Andrew V, Klosterman Peter S, Goldman Nick, Holmes Ian
Publikováno v:
BMC Bioinformatics, Vol 7, Iss 1, p 428 (2006)
Abstract Background Recent years have seen the emergence of genome annotation methods based on the phylo-grammar, a probabilistic model combining continuous-time Markov chains and stochastic grammars. Previously, phylo-grammars have required consider
Externí odkaz:
https://doaj.org/article/88bc39ad8c104100990badac07cda979
Akademický článek
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Autor:
Slodkowicz, Greg, Goldman, Nick
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America, 2020 Mar . 117(11), 5977-5986.
Externí odkaz:
https://www.jstor.org/stable/26929361
Phylogenetic inference can potentially result in a more accurate tree using data from multiple loci. However, if the loci are incongruent--due to events such as incomplete lineage sorting or horizontal gene transfer--it can be misleading to infer a s
Externí odkaz:
http://arxiv.org/abs/1510.02356
In line with the importance of RNA-seq, the bioinformatics community has produced numerous data analysis tools incorporating methods to correct sample-specific biases. However, few advanced simulation tools exist to enable benchmarking of competing c
Externí odkaz:
http://arxiv.org/abs/1308.3172