Zobrazeno 1 - 10
of 36
pro vyhledávání: '"Glenn R. Luecke"'
Autor:
Nathan T. Weeks, Glenn R. Luecke
Publikováno v:
Cluster Computing. 20:1869-1880
SAMtools is a widely-used genomics application for post-processing high-throughput sequence alignment data. Such sequence alignment data are commonly sorted to make downstream analysis more efficient. However, this sorting process itself can be compu
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::94c604046865c397faf34206d1563980
https://doi.org/10.1007/s10586-017-0874-8
https://doi.org/10.1007/s10586-017-0874-8
Autor:
James E. Koltes, Nathan T. Weeks, Glenn R. Luecke, Brandon M. Groth, James M. Reecy, Li Ma, Marina Kraeva, Luke M. Kramer
Publikováno v:
The International Journal of High Performance Computing Applications. 32:321-336
epiSNP is a program for identifying pairwise single nucleotide polymorphism (SNP) interactions (epistasis) in quantitative-trait genome-wide association studies (GWAS). A parallel MPI version (EPISNPmpi) was created in 2008 to address this computatio
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::75cd95ec8bbd009631e5624670b6fee1
https://doi.org/10.1177/1094342016658110
https://doi.org/10.1177/1094342016658110
Autor:
Gianina Alina Negoita, Esmond G. Ng, Chao Yang, Pieter Maris, Matthew Lockner, Ik Jae Shin, Andrey M. Shirokov, Glenn R. Luecke, G. M. Prabhu, Youngman Kim, James P. Vary
Ab initio approaches in nuclear theory, such as the no-core shell model (NCSM), have been developed for approximately solving finite nuclei with realistic strong interactions. The NCSM and other approaches require an extrapolation of the results obta
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::63e4af08475ce2fa06accd6716b501bf
http://arxiv.org/abs/1810.04009
http://arxiv.org/abs/1810.04009
Publikováno v:
CLUSTER
Powerful high performance computing systems of the future are expected to have higher failure rates than current systems. As a result, HPC applications running on such future systems are more likely to encounter a system failure than on today's machi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ce7a2f1c7af62a75d0cd8cfd604a780f
https://doi.org/10.1109/cluster.2018.00068
https://doi.org/10.1109/cluster.2018.00068
Autor:
Glenn R. Luecke, Nathan T. Weeks
Publikováno v:
Euro-Par 2016: Parallel Processing Workshops ISBN: 9783319589428
Euro-Par Workshops
Euro-Par Workshops
SAMtools is a suite of tools that is widely-used in genomics workflows for post-processing sequence alignment data from large high-throughput sequencing data sets. A common use of SAMtools is to sort the standard Binary Alignment/Map (BAM) format emi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::c6ecabb603474e1e98ea6f29f927c8a8
https://doi.org/10.1007/978-3-319-58943-5_33
https://doi.org/10.1007/978-3-319-58943-5_33
Publikováno v:
Concurrency and Computation: Practice and Experience. 26:396-411
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::b0a83e1896aaf021f8b3d35120d0c487
https://doi.org/10.1002/cpe.3001
https://doi.org/10.1002/cpe.3001
Publikováno v:
Computer Science - Research and Development. 28:203-209
Unified Parallel C (UPC) is a language used to write parallel programs for distributed memory parallel computers. UPC-CHECK ( http://hpcgroup.public.iastate.edu/UPC-CHECK/ ) is a scalable tool developed to automatically detect argument errors in UPC
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::e239f260b99bbc8114a77cea0888f096
https://doi.org/10.1007/s00450-012-0214-4
https://doi.org/10.1007/s00450-012-0214-4
Publikováno v:
Benchmarking: An International Journal. 14:728-749
PurposeThe purpose of this paper is to evaluate how to use nodes in a cluster efficiently by studying the NAS Parallel Benchmarks (NASPB) on Intel Xeon and AMD Opteron dual CPU Linux clusters.Design/methodology/approachThe performance results of the
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::736e70c0a8581e636f5fb4329a40f96a
https://doi.org/10.1108/14635770710834518
https://doi.org/10.1108/14635770710834518
Autor:
Jim Hoekstra, James Coyle, Yanmei Wang, Marina Kraeva, Olga Taborskaia, Ying Li, Glenn R. Luecke
Publikováno v:
Concurrency and Computation: Practice and Experience. 18:1885-1907
This paper evaluates the ability of a variety of commercial and non-commercial software products to detect serial run-time errors in C and C++ programs, to issue meaningful messages, and to give the line in the source code where the error occurred. T
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::c05d565cb967691c277375c6b4ad790a
https://doi.org/10.1002/cpe.1036
https://doi.org/10.1002/cpe.1036
Publikováno v:
Concurrency and Computation: Practice and Experience. 15:779-802
SUMMARY The purpose of this paper is to compare the performance of MPICH with the vendor Message Passing Interface (MPI) on a Cray T3E-900 and an SGI Origin 3000. Seven basiccommunication tests which include basic point-to-point and collective MPI co
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::75884621ea251405bb472902aad88845
https://doi.org/10.1002/cpe.719
https://doi.org/10.1002/cpe.719