Rapid design of bacteriophage cocktails to suppress the burden and virulence of gut-resident carbapenem-resistant Klebsiella pneumoniae.

Autor: Rotman E; Department of Microbiology, University of Chicago, Chicago, IL 60637, USA; Duchoissois Family Institute, University of Chicago, Chicago, IL 60637, USA., McClure S; Department of Microbiology, University of Chicago, Chicago, IL 60637, USA; Duchoissois Family Institute, University of Chicago, Chicago, IL 60637, USA; Committee on Molecular Metabolism and Nutrition, University of Chicago, Chicago, IL 60637, USA., Glazier J; Department of Microbiology, University of Chicago, Chicago, IL 60637, USA; Duchoissois Family Institute, University of Chicago, Chicago, IL 60637, USA; Pritzker School of Molecular Engineering, University of Chicago, Chicago, IL 60637, USA., Fuerte-Stone J; Department of Microbiology, University of Chicago, Chicago, IL 60637, USA; Duchoissois Family Institute, University of Chicago, Chicago, IL 60637, USA; Committee on Microbiology, University of Chicago, Chicago, IL 60637, USA., Foldi J; Department of Microbiology, University of Chicago, Chicago, IL 60637, USA., Erani A; Department of Microbiology, University of Chicago, Chicago, IL 60637, USA., McGann R; Pritzker School of Molecular Engineering, University of Chicago, Chicago, IL 60637, USA., Arnold J; Department of Microbiology, University of Chicago, Chicago, IL 60637, USA; Duchoissois Family Institute, University of Chicago, Chicago, IL 60637, USA; Pritzker School of Molecular Engineering, University of Chicago, Chicago, IL 60637, USA., Lin H; Duchoissois Family Institute, University of Chicago, Chicago, IL 60637, USA., Valaitis S; Department of Obstetrics and Gynecology, Section of Urogynecology, University of Chicago, Chicago, IL 60637, USA., Mimee M; Department of Microbiology, University of Chicago, Chicago, IL 60637, USA; Duchoissois Family Institute, University of Chicago, Chicago, IL 60637, USA; Committee on Molecular Metabolism and Nutrition, University of Chicago, Chicago, IL 60637, USA; Pritzker School of Molecular Engineering, University of Chicago, Chicago, IL 60637, USA. Electronic address: mmimee@uchicago.edu.

Publikováno v: Cell host & microbe [Cell Host Microbe] 2024 Nov 13; Vol. 32 (11), pp. 1988-2003.e8. Date of Electronic Publication: 2024 Oct 04.

Engineered deletions of HIV replicate conditionally to reduce disease in nonhuman primates.

Autor: Pitchai FNN; Gladstone Center for Cell Circuitry, University of California, San Francisco, CA, USA.; Gladstone Institute of Virology, University of California, San Francisco, CA, USA., Tanner EJ; Gladstone Center for Cell Circuitry, University of California, San Francisco, CA, USA.; Gladstone Institute of Virology, University of California, San Francisco, CA, USA., Khetan N; Gladstone Center for Cell Circuitry, University of California, San Francisco, CA, USA.; Gladstone Institute of Virology, University of California, San Francisco, CA, USA., Vasen G; Gladstone Center for Cell Circuitry, University of California, San Francisco, CA, USA.; Gladstone Institute of Virology, University of California, San Francisco, CA, USA., Levrel C; Gladstone Center for Cell Circuitry, University of California, San Francisco, CA, USA.; Gladstone Institute of Virology, University of California, San Francisco, CA, USA., Kumar AJ; Gladstone Center for Cell Circuitry, University of California, San Francisco, CA, USA.; Gladstone Institute of Virology, University of California, San Francisco, CA, USA.; Department of Bioengineering, University of Washington, Seattle, WA, USA., Pandey S; Oregon National Primate Research Center, Oregon Health & Science University, Beaverton, OR, USA., Ordonez T; Oregon National Primate Research Center, Oregon Health & Science University, Beaverton, OR, USA., Barnette P; Oregon National Primate Research Center, Oregon Health & Science University, Beaverton, OR, USA., Spencer D; Oregon National Primate Research Center, Oregon Health & Science University, Beaverton, OR, USA.; Absci Corporation, Vancouver, WA, USA., Jung SY; Gladstone Center for Cell Circuitry, University of California, San Francisco, CA, USA., Glazier J; Gladstone Center for Cell Circuitry, University of California, San Francisco, CA, USA., Thompson C; Gladstone Center for Cell Circuitry, University of California, San Francisco, CA, USA.; Department of Molecular Microbiology, Washington University School of Medicine, St. Louis, MO, USA., Harvey-Vera A, Son HI; Global Health Sciences, Department of Medicine, University of California San Diego, La Jolla, CA, USA.; US-Mexico Border Health Commission, Tijuana, Mexico.; Vaccine and Gene Therapy Institute, Oregon Health & Science University, Beaverton, OR, USA., Son HI; Gladstone Center for Cell Circuitry, University of California, San Francisco, CA, USA., Strathdee SA; Global Health Sciences, Department of Medicine, University of California San Diego, La Jolla, CA, USA., Holguin L; Global Health Sciences, Department of Medicine, University of California San Diego, La Jolla, CA, USA., Urak R; Center for Gene Therapy, Beckman Research Institute, City of Hope National Medical Center, Duarte, CA, USA., Burnett J; Center for Gene Therapy, Beckman Research Institute, City of Hope National Medical Center, Duarte, CA, USA.; Department of Microbiology and Immunology, Miller School of Medicine, University of Miami, Miami, FL, USA., Burgess W; Vaccine and Gene Therapy Institute, Oregon Health & Science University, Beaverton, OR, USA., Busman-Sahay K; Vaccine and Gene Therapy Institute, Oregon Health & Science University, Beaverton, OR, USA., Estes JD; Vaccine and Gene Therapy Institute, Oregon Health & Science University, Beaverton, OR, USA.; Faculty of Health, Department of Clinical Medicine, Aarhus University, Aarhus, Denmark.; School of Health and Biomedical Sciences College of Science, Engineering and Health RMIT University, Melbourne, Australia., Hessell A; Oregon National Primate Research Center, Oregon Health & Science University, Beaverton, OR, USA., Fennessey CM; AIDS and Cancer Virus Program, Frederick National Laboratory for Cancer Research, Frederick, MD, USA., Keele BF; AIDS and Cancer Virus Program, Frederick National Laboratory for Cancer Research, Frederick, MD, USA., Haigwood NL; Oregon National Primate Research Center, Oregon Health & Science University, Beaverton, OR, USA., Weinberger LS; Gladstone Center for Cell Circuitry, University of California, San Francisco, CA, USA.; Gladstone Institute of Virology, University of California, San Francisco, CA, USA.; Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA, USA.; Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA, USA.

Publikováno v: Science (New York, N.Y.) [Science] 2024 Aug 09; Vol. 385 (6709), pp. eadn5866. Date of Electronic Publication: 2024 Aug 09.

Hysteresis and Avalanches in Two Dimensional Foam Rheology Simulations

Autor: Jiang, Y., Swart, P. J., Saxena, A., Asipauskas, M., Glazier, J. A.

Foams have unique rheological properties that range from solid-like to fluid-like. We study two-dimensional non-coarsening foams of different disorder under shear in a Monte Carlo simulation, using a driven large-Q Potts model. We find that the dynam

Externí odkaz: http://arxiv.org/abs/cond-mat/9902111

Cell Sorting Is Analogous to Phase Ordering in Fluids

Autor: Beysens, D. A., Forgacs, G., Glazier, J. A.

Publikováno v: Proceedings of the National Academy of Sciences of the United States of America, 2000 Aug . 97(17), 9467-9471.

Externí odkaz: https://www.jstor.org/stable/123486

Forum on immune digital twins: a meeting report.

Autor: Laubenbacher R; Department of Medicine, University of Florida, Gainesville, FL, USA. reinhard.laubenbacher@medicine.ufl.edu., Adler F; Department of Mathematics and School of Biological Sciences, University of Utah, Salt Lake City, UT, USA., An G; Department of Surgery, University of Vermont, Burlington, VT, USA., Castiglione F; Biotechnology Research Center, Technology Innovation Institute, Abu Dhabi, UAE., Eubank S; Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA, USA., Fonseca LL; Department of Medicine, University of Florida, Gainesville, FL, USA., Glazier J; Department of Intelligent Systems Engineering, Indiana University, Bloomington, IN, USA., Helikar T; Department of Biochemistry, University of Nebraska, Lincoln, NE, USA., Jett-Tilton M; U.S. Walter Reed Army Institute of Research, Silver Spring, MD, USA., Kirschner D; Department of Microbiology and Immunology, University of Michigan, Ann Arbor, MI, USA., Macklin P; Department of Intelligent Systems Engineering, Indiana University, Bloomington, IN, USA., Mehrad B; Department of Medicine, University of Florida, Gainesville, FL, USA., Moore B; Department of Microbiology and Immunology, University of Michigan, Ann Arbor, MI, USA., Pasour V; U.S. Army Research Office, Research Triangle Park, Raleigh, NC, USA., Shmulevich I; Institute for Systems Biology, Seattle, WA, USA., Smith A; Department of Pediatrics, University of Tennessee Health Science Center, Memphis, TN, USA., Voigt I; Center of Clinical Neuroscience, Department of Neurology, Medical Faculty and University Hospital Carl Gustav Carus, TUD Dresden University of Technology, Fetscherstraße 74, 01307, Dresden, Germany., Yankeelov TE; Department of Biomedical Engineering, Oden Institute for Computational Engineering and Sciences, Departments of Biomedical Engineering, Diagnostic Medicine, Oncology, The University of Texas, Austin, TX, USA.; Department of Imaging Physics, The University of Texas MD Anderson Cancer Center, Houston, USA., Ziemssen T; Center of Clinical Neuroscience, Department of Neurology, Medical Faculty and University Hospital Carl Gustav Carus, TUD Dresden University of Technology, Fetscherstraße 74, 01307, Dresden, Germany.

Publikováno v: NPJ systems biology and applications [NPJ Syst Biol Appl] 2024 Feb 16; Vol. 10 (1), pp. 19. Date of Electronic Publication: 2024 Feb 16.